Gene : Brara.K00046 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR11387:SF15 - CYTOCHROME C OXIDASE SUBUNIT 6B-1 Genomic Order:  30
Name:  ? Brara.K00046 Secondary Identifier:  ? PAC:30614673
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-3781 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7279 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00046 0.5kb upstream 0.5kb upstream 1378 true Scaffold10985: 194026-195403 Brassica rapa FPsc
Brara.K00046 0.5kb upstream 0.5kb upstream 500 false Scaffold10985: 194026-194525 Brassica rapa FPsc
Brara.K00046 0.5kb downstream 0.5kb downstream 1378 true Scaffold10985: 194526-195903 Brassica rapa FPsc
Brara.K00046 0.5kb downstream 0.5kb downstream 500 false Scaffold10985: 195404-195903 Brassica rapa FPsc
Brara.K00046 1.0kb upstream 1.0kb upstream 1878 true Scaffold10985: 193526-195403 Brassica rapa FPsc
Brara.K00046 1.0kb upstream 1.0kb upstream 1000 false Scaffold10985: 193526-194525 Brassica rapa FPsc
Brara.K00046 1.0kb downstream 1.0kb downstream 1878 true Scaffold10985: 194526-196403 Brassica rapa FPsc
Brara.K00046 1.0kb downstream 1.0kb downstream 1000 false Scaffold10985: 195404-196403 Brassica rapa FPsc
Brara.K00046 2.0kb upstream 2.0kb upstream 2878 true Scaffold10985: 192526-195403 Brassica rapa FPsc
Brara.K00046 2.0kb upstream 2.0kb upstream 2000 false Scaffold10985: 192526-194525 Brassica rapa FPsc
Brara.K00046 2.0kb downstream 2.0kb downstream 2878 true Scaffold10985: 194526-197403 Brassica rapa FPsc
Brara.K00046 2.0kb downstream 2.0kb downstream 2000 false Scaffold10985: 195404-197403 Brassica rapa FPsc
Brara.K00046 5.0kb upstream 5.0kb upstream 5878 true Scaffold10985: 189526-195403 Brassica rapa FPsc
Brara.K00046 5.0kb upstream 5.0kb upstream 5000 false Scaffold10985: 189526-194525 Brassica rapa FPsc
Brara.K00046 5.0kb downstream 5.0kb downstream 5878 true Scaffold10985: 194526-200403 Brassica rapa FPsc
Brara.K00046 5.0kb downstream 5.0kb downstream 5000 false Scaffold10985: 195404-200403 Brassica rapa FPsc
Brara.K00046 10.0kb upstream 10.0kb upstream 10878 true Scaffold10985: 184526-195403 Brassica rapa FPsc
Brara.K00046 10.0kb upstream 10.0kb upstream 10000 false Scaffold10985: 184526-194525 Brassica rapa FPsc
Brara.K00046 10.0kb downstream 10.0kb downstream 10878 true Scaffold10985: 194526-205403 Brassica rapa FPsc
Brara.K00046 10.0kb downstream 10.0kb downstream 10000 false Scaffold10985: 195404-205403 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346695 5261 Brassicaceae Singleton cluster - no MSA
123786343 5264 Brassicales-Malvales Singleton cluster - no MSA
124284455 5266 SBM Singleton cluster - no MSA
124138667 5268 Malvidae Singleton cluster - no MSA
124068898 5270 Rosid View MSA
123741112 5271 Pentapetalae View MSA
122785907 5272 Eudicot View MSA
122042170 5273 Angiosperm View MSA
121351047 5274 Embryophyte View MSA
123424784 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier