Gene : Brara.C03221 B. rapa FPsc v1.3
Defline:  (1 of 1) KOG2797 - Prephenate dehydratase Genomic Order:  3221
Name:  ? Brara.C03221 Secondary Identifier:  ? PAC:30616667
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-3462 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3481 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C03221 0.5kb upstream 0.5kb upstream 2873 true A03: 16321905-16324777 Brassica rapa FPsc
Brara.C03221 0.5kb upstream 0.5kb upstream 500 false A03: 16321905-16322404 Brassica rapa FPsc
Brara.C03221 0.5kb downstream 0.5kb downstream 2873 true A03: 16322405-16325277 Brassica rapa FPsc
Brara.C03221 0.5kb downstream 0.5kb downstream 500 false A03: 16324778-16325277 Brassica rapa FPsc
Brara.C03221 1.0kb upstream 1.0kb upstream 3373 true A03: 16321405-16324777 Brassica rapa FPsc
Brara.C03221 1.0kb upstream 1.0kb upstream 1000 false A03: 16321405-16322404 Brassica rapa FPsc
Brara.C03221 1.0kb downstream 1.0kb downstream 3373 true A03: 16322405-16325777 Brassica rapa FPsc
Brara.C03221 1.0kb downstream 1.0kb downstream 1000 false A03: 16324778-16325777 Brassica rapa FPsc
Brara.C03221 2.0kb upstream 2.0kb upstream 4373 true A03: 16320405-16324777 Brassica rapa FPsc
Brara.C03221 2.0kb upstream 2.0kb upstream 2000 false A03: 16320405-16322404 Brassica rapa FPsc
Brara.C03221 2.0kb downstream 2.0kb downstream 4373 true A03: 16322405-16326777 Brassica rapa FPsc
Brara.C03221 2.0kb downstream 2.0kb downstream 2000 false A03: 16324778-16326777 Brassica rapa FPsc
Brara.C03221 5.0kb upstream 5.0kb upstream 7373 true A03: 16317405-16324777 Brassica rapa FPsc
Brara.C03221 5.0kb upstream 5.0kb upstream 5000 false A03: 16317405-16322404 Brassica rapa FPsc
Brara.C03221 5.0kb downstream 5.0kb downstream 7373 true A03: 16322405-16329777 Brassica rapa FPsc
Brara.C03221 5.0kb downstream 5.0kb downstream 5000 false A03: 16324778-16329777 Brassica rapa FPsc
Brara.C03221 10.0kb upstream 10.0kb upstream 12373 true A03: 16312405-16324777 Brassica rapa FPsc
Brara.C03221 10.0kb upstream 10.0kb upstream 10000 false A03: 16312405-16322404 Brassica rapa FPsc
Brara.C03221 10.0kb downstream 10.0kb downstream 12373 true A03: 16322405-16334777 Brassica rapa FPsc
Brara.C03221 10.0kb downstream 10.0kb downstream 10000 false A03: 16324778-16334777 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040982 5273 Angiosperm View MSA
122347280 5261 Brassicaceae Singleton cluster - no MSA
123842402 5264 Brassicales-Malvales View MSA
124323466 5266 SBM View MSA
124169482 5268 Malvidae View MSA
124068045 5270 Rosid View MSA
123737852 5271 Pentapetalae View MSA
122798804 5272 Eudicot View MSA
121351398 5274 Embryophyte View MSA
123427097 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier