Gene : Brara.K01292 B. rapa FPsc v1.3
Defline:  (1 of 11) 2.5.1.1//2.5.1.10//2.5.1.29 - Dimethylallyltranstransferase / Prenyltransferase // (2E,6E)-farnesyl diphosphate synthase / Geranyltranstransferase // Geranylgeranyl diphosphate synthase / Geranylgeranyl-PP synthetase Genomic Order:  24
Name:  ? Brara.K01292 Secondary Identifier:  ? PAC:30623274
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5120 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5122 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5123 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5910 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7709 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K01292 0.5kb upstream 0.5kb upstream 2694 true Scaffold58736: 231869-234562 Brassica rapa FPsc
Brara.K01292 0.5kb upstream 0.5kb upstream 500 false Scaffold58736: 234063-234562 Brassica rapa FPsc
Brara.K01292 0.5kb downstream 0.5kb downstream 2694 true Scaffold58736: 231369-234062 Brassica rapa FPsc
Brara.K01292 0.5kb downstream 0.5kb downstream 500 false Scaffold58736: 231369-231868 Brassica rapa FPsc
Brara.K01292 1.0kb upstream 1.0kb upstream 3194 true Scaffold58736: 231869-235062 Brassica rapa FPsc
Brara.K01292 1.0kb upstream 1.0kb upstream 1000 false Scaffold58736: 234063-235062 Brassica rapa FPsc
Brara.K01292 1.0kb downstream 1.0kb downstream 3194 true Scaffold58736: 230869-234062 Brassica rapa FPsc
Brara.K01292 1.0kb downstream 1.0kb downstream 1000 false Scaffold58736: 230869-231868 Brassica rapa FPsc
Brara.K01292 2.0kb upstream 2.0kb upstream 4194 true Scaffold58736: 231869-236062 Brassica rapa FPsc
Brara.K01292 2.0kb upstream 2.0kb upstream 2000 false Scaffold58736: 234063-236062 Brassica rapa FPsc
Brara.K01292 2.0kb downstream 2.0kb downstream 4194 true Scaffold58736: 229869-234062 Brassica rapa FPsc
Brara.K01292 2.0kb downstream 2.0kb downstream 2000 false Scaffold58736: 229869-231868 Brassica rapa FPsc
Brara.K01292 5.0kb upstream 5.0kb upstream 7194 true Scaffold58736: 231869-239062 Brassica rapa FPsc
Brara.K01292 5.0kb upstream 5.0kb upstream 5000 false Scaffold58736: 234063-239062 Brassica rapa FPsc
Brara.K01292 5.0kb downstream 5.0kb downstream 7194 true Scaffold58736: 226869-234062 Brassica rapa FPsc
Brara.K01292 5.0kb downstream 5.0kb downstream 5000 false Scaffold58736: 226869-231868 Brassica rapa FPsc
Brara.K01292 10.0kb upstream 10.0kb upstream 12194 true Scaffold58736: 231869-244062 Brassica rapa FPsc
Brara.K01292 10.0kb upstream 10.0kb upstream 10000 false Scaffold58736: 234063-244062 Brassica rapa FPsc
Brara.K01292 10.0kb downstream 10.0kb downstream 12194 true Scaffold58736: 221869-234062 Brassica rapa FPsc
Brara.K01292 10.0kb downstream 10.0kb downstream 10000 false Scaffold58736: 221869-231868 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122349075 5261 Brassicaceae Singleton cluster - no MSA
123842220 5264 Brassicales-Malvales View MSA
124350864 5266 SBM View MSA
124251250 5268 Malvidae View MSA
124051358 5270 Rosid View MSA
123745518 5271 Pentapetalae View MSA
122795597 5272 Eudicot View MSA
122051071 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier