Gene : Brara.C03433 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR11406:SF8 - PHOSPHOGLYCERATE KINASE 1, CHLOROPLASTIC-RELATED Genomic Order:  3433
Name:  ? Brara.C03433 Secondary Identifier:  ? PAC:30615512
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ANAEROFRUCAT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc ANAGLYCOLYSIS-PWY Brassica rapa FPsc pathologic  
BrapaFPsc CALVIN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc GLUCONEO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PHOTOALL-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-1042 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-399 Brassica rapa FPsc pathologic  
BrapaFPsc SUCSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C03433 0.5kb upstream 0.5kb upstream 3219 true A03: 17359852-17363070 Brassica rapa FPsc
Brara.C03433 0.5kb upstream 0.5kb upstream 500 false A03: 17362571-17363070 Brassica rapa FPsc
Brara.C03433 0.5kb downstream 0.5kb downstream 3219 true A03: 17359352-17362570 Brassica rapa FPsc
Brara.C03433 0.5kb downstream 0.5kb downstream 500 false A03: 17359352-17359851 Brassica rapa FPsc
Brara.C03433 1.0kb upstream 1.0kb upstream 3719 true A03: 17359852-17363570 Brassica rapa FPsc
Brara.C03433 1.0kb upstream 1.0kb upstream 1000 false A03: 17362571-17363570 Brassica rapa FPsc
Brara.C03433 1.0kb downstream 1.0kb downstream 3719 true A03: 17358852-17362570 Brassica rapa FPsc
Brara.C03433 1.0kb downstream 1.0kb downstream 1000 false A03: 17358852-17359851 Brassica rapa FPsc
Brara.C03433 2.0kb upstream 2.0kb upstream 4719 true A03: 17359852-17364570 Brassica rapa FPsc
Brara.C03433 2.0kb upstream 2.0kb upstream 2000 false A03: 17362571-17364570 Brassica rapa FPsc
Brara.C03433 2.0kb downstream 2.0kb downstream 4719 true A03: 17357852-17362570 Brassica rapa FPsc
Brara.C03433 2.0kb downstream 2.0kb downstream 2000 false A03: 17357852-17359851 Brassica rapa FPsc
Brara.C03433 5.0kb upstream 5.0kb upstream 7719 true A03: 17359852-17367570 Brassica rapa FPsc
Brara.C03433 5.0kb upstream 5.0kb upstream 5000 false A03: 17362571-17367570 Brassica rapa FPsc
Brara.C03433 5.0kb downstream 5.0kb downstream 7719 true A03: 17354852-17362570 Brassica rapa FPsc
Brara.C03433 5.0kb downstream 5.0kb downstream 5000 false A03: 17354852-17359851 Brassica rapa FPsc
Brara.C03433 10.0kb upstream 10.0kb upstream 12719 true A03: 17359852-17372570 Brassica rapa FPsc
Brara.C03433 10.0kb upstream 10.0kb upstream 10000 false A03: 17362571-17372570 Brassica rapa FPsc
Brara.C03433 10.0kb downstream 10.0kb downstream 12719 true A03: 17349852-17362570 Brassica rapa FPsc
Brara.C03433 10.0kb downstream 10.0kb downstream 10000 false A03: 17349852-17359851 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366001 5261 Brassicaceae View MSA
123832866 5264 Brassicales-Malvales View MSA
124347781 5266 SBM View MSA
124238345 5268 Malvidae View MSA
124066937 5270 Rosid View MSA
123738509 5271 Pentapetalae View MSA
122793227 5272 Eudicot View MSA
122042825 5273 Angiosperm View MSA
121348563 5274 Embryophyte View MSA
123423936 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier