Gene : Brara.C03441 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR10044:SF107 - BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 3-RELATED Genomic Order:  3441
Name:  ? Brara.C03441 Secondary Identifier:  ? PAC:30616417
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C03441 0.5kb upstream 0.5kb upstream 1856 true A03: 17407272-17409127 Brassica rapa FPsc
Brara.C03441 0.5kb upstream 0.5kb upstream 500 false A03: 17408628-17409127 Brassica rapa FPsc
Brara.C03441 0.5kb downstream 0.5kb downstream 1856 true A03: 17406772-17408627 Brassica rapa FPsc
Brara.C03441 0.5kb downstream 0.5kb downstream 500 false A03: 17406772-17407271 Brassica rapa FPsc
Brara.C03441 1.0kb upstream 1.0kb upstream 2356 true A03: 17407272-17409627 Brassica rapa FPsc
Brara.C03441 1.0kb upstream 1.0kb upstream 1000 false A03: 17408628-17409627 Brassica rapa FPsc
Brara.C03441 1.0kb downstream 1.0kb downstream 2356 true A03: 17406272-17408627 Brassica rapa FPsc
Brara.C03441 1.0kb downstream 1.0kb downstream 1000 false A03: 17406272-17407271 Brassica rapa FPsc
Brara.C03441 2.0kb upstream 2.0kb upstream 3356 true A03: 17407272-17410627 Brassica rapa FPsc
Brara.C03441 2.0kb upstream 2.0kb upstream 2000 false A03: 17408628-17410627 Brassica rapa FPsc
Brara.C03441 2.0kb downstream 2.0kb downstream 3356 true A03: 17405272-17408627 Brassica rapa FPsc
Brara.C03441 2.0kb downstream 2.0kb downstream 2000 false A03: 17405272-17407271 Brassica rapa FPsc
Brara.C03441 5.0kb upstream 5.0kb upstream 6356 true A03: 17407272-17413627 Brassica rapa FPsc
Brara.C03441 5.0kb upstream 5.0kb upstream 5000 false A03: 17408628-17413627 Brassica rapa FPsc
Brara.C03441 5.0kb downstream 5.0kb downstream 6356 true A03: 17402272-17408627 Brassica rapa FPsc
Brara.C03441 5.0kb downstream 5.0kb downstream 5000 false A03: 17402272-17407271 Brassica rapa FPsc
Brara.C03441 10.0kb upstream 10.0kb upstream 11356 true A03: 17407272-17418627 Brassica rapa FPsc
Brara.C03441 10.0kb upstream 10.0kb upstream 10000 false A03: 17408628-17418627 Brassica rapa FPsc
Brara.C03441 10.0kb downstream 10.0kb downstream 11356 true A03: 17397272-17408627 Brassica rapa FPsc
Brara.C03441 10.0kb downstream 10.0kb downstream 10000 false A03: 17397272-17407271 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376394 5261 Brassicaceae View MSA
123837384 5264 Brassicales-Malvales View MSA
124345958 5266 SBM View MSA
124243866 5268 Malvidae View MSA
124065052 5270 Rosid View MSA
123752259 5271 Pentapetalae View MSA
122794971 5272 Eudicot View MSA
122050089 5273 Angiosperm View MSA
121348016 5274 Embryophyte View MSA
123380706 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier