Gene : Brara.F00711 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR31375:SF46 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  711
Name:  ? Brara.F00711 Secondary Identifier:  ? PAC:30627695
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F00711 0.5kb upstream 0.5kb upstream 3005 true A06: 4021358-4024362 Brassica rapa FPsc
Brara.F00711 0.5kb upstream 0.5kb upstream 500 false A06: 4023863-4024362 Brassica rapa FPsc
Brara.F00711 0.5kb downstream 0.5kb downstream 3005 true A06: 4020858-4023862 Brassica rapa FPsc
Brara.F00711 0.5kb downstream 0.5kb downstream 500 false A06: 4020858-4021357 Brassica rapa FPsc
Brara.F00711 1.0kb upstream 1.0kb upstream 3505 true A06: 4021358-4024862 Brassica rapa FPsc
Brara.F00711 1.0kb upstream 1.0kb upstream 1000 false A06: 4023863-4024862 Brassica rapa FPsc
Brara.F00711 1.0kb downstream 1.0kb downstream 3505 true A06: 4020358-4023862 Brassica rapa FPsc
Brara.F00711 1.0kb downstream 1.0kb downstream 1000 false A06: 4020358-4021357 Brassica rapa FPsc
Brara.F00711 2.0kb upstream 2.0kb upstream 4505 true A06: 4021358-4025862 Brassica rapa FPsc
Brara.F00711 2.0kb upstream 2.0kb upstream 2000 false A06: 4023863-4025862 Brassica rapa FPsc
Brara.F00711 2.0kb downstream 2.0kb downstream 4505 true A06: 4019358-4023862 Brassica rapa FPsc
Brara.F00711 2.0kb downstream 2.0kb downstream 2000 false A06: 4019358-4021357 Brassica rapa FPsc
Brara.F00711 5.0kb upstream 5.0kb upstream 7505 true A06: 4021358-4028862 Brassica rapa FPsc
Brara.F00711 5.0kb upstream 5.0kb upstream 5000 false A06: 4023863-4028862 Brassica rapa FPsc
Brara.F00711 5.0kb downstream 5.0kb downstream 7505 true A06: 4016358-4023862 Brassica rapa FPsc
Brara.F00711 5.0kb downstream 5.0kb downstream 5000 false A06: 4016358-4021357 Brassica rapa FPsc
Brara.F00711 10.0kb upstream 10.0kb upstream 12505 true A06: 4021358-4033862 Brassica rapa FPsc
Brara.F00711 10.0kb upstream 10.0kb upstream 10000 false A06: 4023863-4033862 Brassica rapa FPsc
Brara.F00711 10.0kb downstream 10.0kb downstream 12505 true A06: 4011358-4023862 Brassica rapa FPsc
Brara.F00711 10.0kb downstream 10.0kb downstream 10000 false A06: 4011358-4021357 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122356069 5261 Brassicaceae View MSA
123794221 5264 Brassicales-Malvales View MSA
124292035 5266 SBM View MSA
124144869 5268 Malvidae View MSA
123871346 5270 Rosid View MSA
123455597 5271 Pentapetalae View MSA
122491031 5272 Eudicot View MSA
122049793 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier