Gene : Brara.D00143 B. rapa FPsc v1.3
Defline:  (1 of 3) 2.2.1.1//2.2.1.2 - Transketolase / Glycoaldehyde transferase // Transaldolase / Glycerone transferase Genomic Order:  143
Name:  ? Brara.D00143 Secondary Identifier:  ? PAC:30620981
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CALVIN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc NONOXIPENT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PENTOSE-P-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PHOTOALL-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5723 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D00143 0.5kb upstream 0.5kb upstream 3845 true A04: 955589-959433 Brassica rapa FPsc
Brara.D00143 0.5kb upstream 0.5kb upstream 500 false A04: 958934-959433 Brassica rapa FPsc
Brara.D00143 0.5kb downstream 0.5kb downstream 3845 true A04: 955089-958933 Brassica rapa FPsc
Brara.D00143 0.5kb downstream 0.5kb downstream 500 false A04: 955089-955588 Brassica rapa FPsc
Brara.D00143 1.0kb upstream 1.0kb upstream 4345 true A04: 955589-959933 Brassica rapa FPsc
Brara.D00143 1.0kb upstream 1.0kb upstream 1000 false A04: 958934-959933 Brassica rapa FPsc
Brara.D00143 1.0kb downstream 1.0kb downstream 4345 true A04: 954589-958933 Brassica rapa FPsc
Brara.D00143 1.0kb downstream 1.0kb downstream 1000 false A04: 954589-955588 Brassica rapa FPsc
Brara.D00143 2.0kb upstream 2.0kb upstream 5345 true A04: 955589-960933 Brassica rapa FPsc
Brara.D00143 2.0kb upstream 2.0kb upstream 2000 false A04: 958934-960933 Brassica rapa FPsc
Brara.D00143 2.0kb downstream 2.0kb downstream 5345 true A04: 953589-958933 Brassica rapa FPsc
Brara.D00143 2.0kb downstream 2.0kb downstream 2000 false A04: 953589-955588 Brassica rapa FPsc
Brara.D00143 5.0kb upstream 5.0kb upstream 8345 true A04: 955589-963933 Brassica rapa FPsc
Brara.D00143 5.0kb upstream 5.0kb upstream 5000 false A04: 958934-963933 Brassica rapa FPsc
Brara.D00143 5.0kb downstream 5.0kb downstream 8345 true A04: 950589-958933 Brassica rapa FPsc
Brara.D00143 5.0kb downstream 5.0kb downstream 5000 false A04: 950589-955588 Brassica rapa FPsc
Brara.D00143 10.0kb upstream 10.0kb upstream 13345 true A04: 955589-968933 Brassica rapa FPsc
Brara.D00143 10.0kb upstream 10.0kb upstream 10000 false A04: 958934-968933 Brassica rapa FPsc
Brara.D00143 10.0kb downstream 10.0kb downstream 13345 true A04: 945589-958933 Brassica rapa FPsc
Brara.D00143 10.0kb downstream 10.0kb downstream 10000 false A04: 945589-955588 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379078 5261 Brassicaceae View MSA
123838972 5264 Brassicales-Malvales View MSA
124338518 5266 SBM View MSA
124242357 5268 Malvidae View MSA
124064977 5270 Rosid View MSA
123741287 5271 Pentapetalae View MSA
122787703 5272 Eudicot View MSA
122048752 5273 Angiosperm View MSA
121350420 5274 Embryophyte View MSA
123423818 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier