Gene : Brara.G02278 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR31311:SF4 - GLYCOSYLTRANSFERASE 3-RELATED Genomic Order:  2278
Name:  ? Brara.G02278 Secondary Identifier:  ? PAC:30634580
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5936 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G02278 0.5kb upstream 0.5kb upstream 2432 true A07: 19658649-19661080 Brassica rapa FPsc
Brara.G02278 0.5kb upstream 0.5kb upstream 500 false A07: 19660581-19661080 Brassica rapa FPsc
Brara.G02278 0.5kb downstream 0.5kb downstream 2432 true A07: 19658149-19660580 Brassica rapa FPsc
Brara.G02278 0.5kb downstream 0.5kb downstream 500 false A07: 19658149-19658648 Brassica rapa FPsc
Brara.G02278 1.0kb upstream 1.0kb upstream 2932 true A07: 19658649-19661580 Brassica rapa FPsc
Brara.G02278 1.0kb upstream 1.0kb upstream 1000 false A07: 19660581-19661580 Brassica rapa FPsc
Brara.G02278 1.0kb downstream 1.0kb downstream 2932 true A07: 19657649-19660580 Brassica rapa FPsc
Brara.G02278 1.0kb downstream 1.0kb downstream 1000 false A07: 19657649-19658648 Brassica rapa FPsc
Brara.G02278 2.0kb upstream 2.0kb upstream 3932 true A07: 19658649-19662580 Brassica rapa FPsc
Brara.G02278 2.0kb upstream 2.0kb upstream 2000 false A07: 19660581-19662580 Brassica rapa FPsc
Brara.G02278 2.0kb downstream 2.0kb downstream 3932 true A07: 19656649-19660580 Brassica rapa FPsc
Brara.G02278 2.0kb downstream 2.0kb downstream 2000 false A07: 19656649-19658648 Brassica rapa FPsc
Brara.G02278 5.0kb upstream 5.0kb upstream 6932 true A07: 19658649-19665580 Brassica rapa FPsc
Brara.G02278 5.0kb upstream 5.0kb upstream 5000 false A07: 19660581-19665580 Brassica rapa FPsc
Brara.G02278 5.0kb downstream 5.0kb downstream 6932 true A07: 19653649-19660580 Brassica rapa FPsc
Brara.G02278 5.0kb downstream 5.0kb downstream 5000 false A07: 19653649-19658648 Brassica rapa FPsc
Brara.G02278 10.0kb upstream 10.0kb upstream 11932 true A07: 19658649-19670580 Brassica rapa FPsc
Brara.G02278 10.0kb upstream 10.0kb upstream 10000 false A07: 19660581-19670580 Brassica rapa FPsc
Brara.G02278 10.0kb downstream 10.0kb downstream 11932 true A07: 19648649-19660580 Brassica rapa FPsc
Brara.G02278 10.0kb downstream 10.0kb downstream 10000 false A07: 19648649-19658648 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122351709 5261 Brassicaceae Singleton cluster - no MSA
123790556 5264 Brassicales-Malvales Singleton cluster - no MSA
124288504 5266 SBM Singleton cluster - no MSA
124251626 5268 Malvidae View MSA
124066918 5270 Rosid View MSA
123741049 5271 Pentapetalae View MSA
122787674 5272 Eudicot View MSA
122047290 5273 Angiosperm View MSA
121349054 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier