Gene : Brara.H00292 B. rapa FPsc v1.3
Defline:  (1 of 7) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  292
Name:  ? Brara.H00292 Secondary Identifier:  ? PAC:30649826
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.H00292 0.5kb upstream 0.5kb upstream 1772 true A08: 2675805-2677576 Brassica rapa FPsc
Brara.H00292 0.5kb upstream 0.5kb upstream 500 false A08: 2677077-2677576 Brassica rapa FPsc
Brara.H00292 0.5kb downstream 0.5kb downstream 1772 true A08: 2675305-2677076 Brassica rapa FPsc
Brara.H00292 0.5kb downstream 0.5kb downstream 500 false A08: 2675305-2675804 Brassica rapa FPsc
Brara.H00292 1.0kb upstream 1.0kb upstream 2272 true A08: 2675805-2678076 Brassica rapa FPsc
Brara.H00292 1.0kb upstream 1.0kb upstream 1000 false A08: 2677077-2678076 Brassica rapa FPsc
Brara.H00292 1.0kb downstream 1.0kb downstream 2272 true A08: 2674805-2677076 Brassica rapa FPsc
Brara.H00292 1.0kb downstream 1.0kb downstream 1000 false A08: 2674805-2675804 Brassica rapa FPsc
Brara.H00292 2.0kb upstream 2.0kb upstream 3272 true A08: 2675805-2679076 Brassica rapa FPsc
Brara.H00292 2.0kb upstream 2.0kb upstream 2000 false A08: 2677077-2679076 Brassica rapa FPsc
Brara.H00292 2.0kb downstream 2.0kb downstream 3272 true A08: 2673805-2677076 Brassica rapa FPsc
Brara.H00292 2.0kb downstream 2.0kb downstream 2000 false A08: 2673805-2675804 Brassica rapa FPsc
Brara.H00292 5.0kb upstream 5.0kb upstream 6272 true A08: 2675805-2682076 Brassica rapa FPsc
Brara.H00292 5.0kb upstream 5.0kb upstream 5000 false A08: 2677077-2682076 Brassica rapa FPsc
Brara.H00292 5.0kb downstream 5.0kb downstream 6272 true A08: 2670805-2677076 Brassica rapa FPsc
Brara.H00292 5.0kb downstream 5.0kb downstream 5000 false A08: 2670805-2675804 Brassica rapa FPsc
Brara.H00292 10.0kb upstream 10.0kb upstream 11272 true A08: 2675805-2687076 Brassica rapa FPsc
Brara.H00292 10.0kb upstream 10.0kb upstream 10000 false A08: 2677077-2687076 Brassica rapa FPsc
Brara.H00292 10.0kb downstream 10.0kb downstream 11272 true A08: 2665805-2677076 Brassica rapa FPsc
Brara.H00292 10.0kb downstream 10.0kb downstream 10000 false A08: 2665805-2675804 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369304 5261 Brassicaceae View MSA
123836099 5264 Brassicales-Malvales View MSA
124342349 5266 SBM View MSA
124246737 5268 Malvidae View MSA
124065727 5270 Rosid View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier