Gene : Bostr.3148s0202 B. stricta v1.2
Defline:  (1 of 2) PTHR12181:SF12 - PROTEIN LPIN-1 Genomic Order:  202
Name:  ? Bostr.3148s0202 Secondary Identifier:  ? PAC:30655385
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta TRIGLSYN-PWY Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.3148s0202 0.5kb upstream 0.5kb upstream 4954 true Scaffold3148: 1622389-1627342 Boechera stricta
Bostr.3148s0202 0.5kb upstream 0.5kb upstream 500 false Scaffold3148: 1622389-1622888 Boechera stricta
Bostr.3148s0202 0.5kb downstream 0.5kb downstream 4954 true Scaffold3148: 1622889-1627842 Boechera stricta
Bostr.3148s0202 0.5kb downstream 0.5kb downstream 500 false Scaffold3148: 1627343-1627842 Boechera stricta
Bostr.3148s0202 1.0kb upstream 1.0kb upstream 5454 true Scaffold3148: 1621889-1627342 Boechera stricta
Bostr.3148s0202 1.0kb upstream 1.0kb upstream 1000 false Scaffold3148: 1621889-1622888 Boechera stricta
Bostr.3148s0202 1.0kb downstream 1.0kb downstream 5454 true Scaffold3148: 1622889-1628342 Boechera stricta
Bostr.3148s0202 1.0kb downstream 1.0kb downstream 1000 false Scaffold3148: 1627343-1628342 Boechera stricta
Bostr.3148s0202 2.0kb upstream 2.0kb upstream 6454 true Scaffold3148: 1620889-1627342 Boechera stricta
Bostr.3148s0202 2.0kb upstream 2.0kb upstream 2000 false Scaffold3148: 1620889-1622888 Boechera stricta
Bostr.3148s0202 2.0kb downstream 2.0kb downstream 6454 true Scaffold3148: 1622889-1629342 Boechera stricta
Bostr.3148s0202 2.0kb downstream 2.0kb downstream 2000 false Scaffold3148: 1627343-1629342 Boechera stricta
Bostr.3148s0202 5.0kb upstream 5.0kb upstream 9454 true Scaffold3148: 1617889-1627342 Boechera stricta
Bostr.3148s0202 5.0kb upstream 5.0kb upstream 5000 false Scaffold3148: 1617889-1622888 Boechera stricta
Bostr.3148s0202 5.0kb downstream 5.0kb downstream 9454 true Scaffold3148: 1622889-1632342 Boechera stricta
Bostr.3148s0202 5.0kb downstream 5.0kb downstream 5000 false Scaffold3148: 1627343-1632342 Boechera stricta
Bostr.3148s0202 10.0kb upstream 10.0kb upstream 14454 true Scaffold3148: 1612889-1627342 Boechera stricta
Bostr.3148s0202 10.0kb upstream 10.0kb upstream 10000 false Scaffold3148: 1612889-1622888 Boechera stricta
Bostr.3148s0202 10.0kb downstream 10.0kb downstream 14454 true Scaffold3148: 1622889-1637342 Boechera stricta
Bostr.3148s0202 10.0kb downstream 10.0kb downstream 10000 false Scaffold3148: 1627343-1637342 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375198 5261 Brassicaceae View MSA
123837435 5264 Brassicales-Malvales View MSA
124338514 5266 SBM View MSA
124253229 5268 Malvidae View MSA
124065604 5270 Rosid View MSA
123741487 5271 Pentapetalae View MSA
122792824 5272 Eudicot View MSA
122048354 5273 Angiosperm View MSA
121350822 5274 Embryophyte View MSA
123381897 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain