Gene : Bostr.4825s0006 B. stricta v1.2
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  6
Name:  ? Bostr.4825s0006 Secondary Identifier:  ? PAC:30666364
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta CHLOROPHYLL-SYN Boechera stricta pathologic  
Bstricta HEME-BIOSYNTHESIS-II Boechera stricta pathologic  
Bstricta PWY-5918 Boechera stricta pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.4825s0006 0.5kb upstream 0.5kb upstream 3469 true Scaffold4825: 42250-45718 Boechera stricta
Bostr.4825s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold4825: 45219-45718 Boechera stricta
Bostr.4825s0006 0.5kb downstream 0.5kb downstream 3469 true Scaffold4825: 41750-45218 Boechera stricta
Bostr.4825s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold4825: 41750-42249 Boechera stricta
Bostr.4825s0006 1.0kb upstream 1.0kb upstream 3969 true Scaffold4825: 42250-46218 Boechera stricta
Bostr.4825s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold4825: 45219-46218 Boechera stricta
Bostr.4825s0006 1.0kb downstream 1.0kb downstream 3969 true Scaffold4825: 41250-45218 Boechera stricta
Bostr.4825s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold4825: 41250-42249 Boechera stricta
Bostr.4825s0006 2.0kb upstream 2.0kb upstream 4969 true Scaffold4825: 42250-47218 Boechera stricta
Bostr.4825s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold4825: 45219-47218 Boechera stricta
Bostr.4825s0006 2.0kb downstream 2.0kb downstream 4969 true Scaffold4825: 40250-45218 Boechera stricta
Bostr.4825s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold4825: 40250-42249 Boechera stricta
Bostr.4825s0006 5.0kb upstream 5.0kb upstream 7969 true Scaffold4825: 42250-50218 Boechera stricta
Bostr.4825s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold4825: 45219-50218 Boechera stricta
Bostr.4825s0006 5.0kb downstream 5.0kb downstream 7969 true Scaffold4825: 37250-45218 Boechera stricta
Bostr.4825s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold4825: 37250-42249 Boechera stricta
Bostr.4825s0006 10.0kb upstream 10.0kb upstream 12969 true Scaffold4825: 42250-55218 Boechera stricta
Bostr.4825s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold4825: 45219-55218 Boechera stricta
Bostr.4825s0006 10.0kb downstream 10.0kb downstream 12969 true Scaffold4825: 32250-45218 Boechera stricta
Bostr.4825s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold4825: 32250-42249 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372816 5261 Brassicaceae View MSA
123832763 5264 Brassicales-Malvales View MSA
124343518 5266 SBM View MSA
124242274 5268 Malvidae View MSA
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain