Gene : Bostr.7200s0065 B. stricta v1.2
Defline:  (1 of 13) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  65
Name:  ? Bostr.7200s0065 Secondary Identifier:  ? PAC:30668574
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.7200s0065 0.5kb upstream 0.5kb upstream 1489 true Scaffold7200: 472675-474163 Boechera stricta
Bostr.7200s0065 0.5kb upstream 0.5kb upstream 500 false Scaffold7200: 473664-474163 Boechera stricta
Bostr.7200s0065 0.5kb downstream 0.5kb downstream 1489 true Scaffold7200: 472175-473663 Boechera stricta
Bostr.7200s0065 0.5kb downstream 0.5kb downstream 500 false Scaffold7200: 472175-472674 Boechera stricta
Bostr.7200s0065 1.0kb upstream 1.0kb upstream 1989 true Scaffold7200: 472675-474663 Boechera stricta
Bostr.7200s0065 1.0kb upstream 1.0kb upstream 1000 false Scaffold7200: 473664-474663 Boechera stricta
Bostr.7200s0065 1.0kb downstream 1.0kb downstream 1989 true Scaffold7200: 471675-473663 Boechera stricta
Bostr.7200s0065 1.0kb downstream 1.0kb downstream 1000 false Scaffold7200: 471675-472674 Boechera stricta
Bostr.7200s0065 2.0kb upstream 2.0kb upstream 2989 true Scaffold7200: 472675-475663 Boechera stricta
Bostr.7200s0065 2.0kb upstream 2.0kb upstream 2000 false Scaffold7200: 473664-475663 Boechera stricta
Bostr.7200s0065 2.0kb downstream 2.0kb downstream 2989 true Scaffold7200: 470675-473663 Boechera stricta
Bostr.7200s0065 2.0kb downstream 2.0kb downstream 2000 false Scaffold7200: 470675-472674 Boechera stricta
Bostr.7200s0065 5.0kb upstream 5.0kb upstream 5989 true Scaffold7200: 472675-478663 Boechera stricta
Bostr.7200s0065 5.0kb upstream 5.0kb upstream 5000 false Scaffold7200: 473664-478663 Boechera stricta
Bostr.7200s0065 5.0kb downstream 5.0kb downstream 5989 true Scaffold7200: 467675-473663 Boechera stricta
Bostr.7200s0065 5.0kb downstream 5.0kb downstream 5000 false Scaffold7200: 467675-472674 Boechera stricta
Bostr.7200s0065 10.0kb upstream 10.0kb upstream 10989 true Scaffold7200: 472675-483663 Boechera stricta
Bostr.7200s0065 10.0kb upstream 10.0kb upstream 10000 false Scaffold7200: 473664-483663 Boechera stricta
Bostr.7200s0065 10.0kb downstream 10.0kb downstream 10989 true Scaffold7200: 462675-473663 Boechera stricta
Bostr.7200s0065 10.0kb downstream 10.0kb downstream 10000 false Scaffold7200: 462675-472674 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376328 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain