Gene : Bostr.12659s0054 B. stricta v1.2
Defline:  (1 of 2) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  54
Name:  ? Bostr.12659s0054 Secondary Identifier:  ? PAC:30652425
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Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta GLYSYN-PWY Boechera stricta pathologic  
Bstricta PWY-2161 Boechera stricta pathologic  
Bstricta PWY-3841 Boechera stricta pathologic  
Bstricta SER-GLYSYN-PWY Boechera stricta pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.12659s0054 0.5kb upstream 0.5kb upstream 3650 true Scaffold12659: 312037-315686 Boechera stricta
Bostr.12659s0054 0.5kb upstream 0.5kb upstream 500 false Scaffold12659: 312037-312536 Boechera stricta
Bostr.12659s0054 0.5kb downstream 0.5kb downstream 3650 true Scaffold12659: 312537-316186 Boechera stricta
Bostr.12659s0054 0.5kb downstream 0.5kb downstream 500 false Scaffold12659: 315687-316186 Boechera stricta
Bostr.12659s0054 1.0kb upstream 1.0kb upstream 4150 true Scaffold12659: 311537-315686 Boechera stricta
Bostr.12659s0054 1.0kb upstream 1.0kb upstream 1000 false Scaffold12659: 311537-312536 Boechera stricta
Bostr.12659s0054 1.0kb downstream 1.0kb downstream 4150 true Scaffold12659: 312537-316686 Boechera stricta
Bostr.12659s0054 1.0kb downstream 1.0kb downstream 1000 false Scaffold12659: 315687-316686 Boechera stricta
Bostr.12659s0054 2.0kb upstream 2.0kb upstream 5150 true Scaffold12659: 310537-315686 Boechera stricta
Bostr.12659s0054 2.0kb upstream 2.0kb upstream 2000 false Scaffold12659: 310537-312536 Boechera stricta
Bostr.12659s0054 2.0kb downstream 2.0kb downstream 5150 true Scaffold12659: 312537-317686 Boechera stricta
Bostr.12659s0054 2.0kb downstream 2.0kb downstream 2000 false Scaffold12659: 315687-317686 Boechera stricta
Bostr.12659s0054 5.0kb upstream 5.0kb upstream 8150 true Scaffold12659: 307537-315686 Boechera stricta
Bostr.12659s0054 5.0kb upstream 5.0kb upstream 5000 false Scaffold12659: 307537-312536 Boechera stricta
Bostr.12659s0054 5.0kb downstream 5.0kb downstream 8150 true Scaffold12659: 312537-320686 Boechera stricta
Bostr.12659s0054 5.0kb downstream 5.0kb downstream 5000 false Scaffold12659: 315687-320686 Boechera stricta
Bostr.12659s0054 10.0kb upstream 10.0kb upstream 13150 true Scaffold12659: 302537-315686 Boechera stricta
Bostr.12659s0054 10.0kb upstream 10.0kb upstream 10000 false Scaffold12659: 302537-312536 Boechera stricta
Bostr.12659s0054 10.0kb downstream 10.0kb downstream 13150 true Scaffold12659: 312537-325686 Boechera stricta
Bostr.12659s0054 10.0kb downstream 10.0kb downstream 10000 false Scaffold12659: 315687-325686 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371827 5261 Brassicaceae View MSA
123838669 5264 Brassicales-Malvales View MSA
124343045 5266 SBM View MSA
124253011 5268 Malvidae View MSA
124069560 5270 Rosid View MSA
123741866 5271 Pentapetalae View MSA
122787051 5272 Eudicot View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain