Gene : Bostr.13158s0205 B. stricta v1.2
Defline:  (1 of 2) PTHR10509:SF27 - PROTEIN COMT-1 Genomic Order:  205
Name:  ? Bostr.13158s0205 Secondary Identifier:  ? PAC:30678665
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-1121 Boechera stricta pathologic  
Bstricta PWY-361 Boechera stricta pathologic  
Bstricta PWY-6039 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.13158s0205 0.5kb upstream 0.5kb upstream 2738 true Scaffold13158: 998048-1000785 Boechera stricta
Bostr.13158s0205 0.5kb upstream 0.5kb upstream 500 false Scaffold13158: 1000286-1000785 Boechera stricta
Bostr.13158s0205 0.5kb downstream 0.5kb downstream 2738 true Scaffold13158: 997548-1000285 Boechera stricta
Bostr.13158s0205 0.5kb downstream 0.5kb downstream 500 false Scaffold13158: 997548-998047 Boechera stricta
Bostr.13158s0205 1.0kb upstream 1.0kb upstream 3238 true Scaffold13158: 998048-1001285 Boechera stricta
Bostr.13158s0205 1.0kb upstream 1.0kb upstream 1000 false Scaffold13158: 1000286-1001285 Boechera stricta
Bostr.13158s0205 1.0kb downstream 1.0kb downstream 3238 true Scaffold13158: 997048-1000285 Boechera stricta
Bostr.13158s0205 1.0kb downstream 1.0kb downstream 1000 false Scaffold13158: 997048-998047 Boechera stricta
Bostr.13158s0205 2.0kb upstream 2.0kb upstream 4238 true Scaffold13158: 998048-1002285 Boechera stricta
Bostr.13158s0205 2.0kb upstream 2.0kb upstream 2000 false Scaffold13158: 1000286-1002285 Boechera stricta
Bostr.13158s0205 2.0kb downstream 2.0kb downstream 4238 true Scaffold13158: 996048-1000285 Boechera stricta
Bostr.13158s0205 2.0kb downstream 2.0kb downstream 2000 false Scaffold13158: 996048-998047 Boechera stricta
Bostr.13158s0205 5.0kb upstream 5.0kb upstream 7238 true Scaffold13158: 998048-1005285 Boechera stricta
Bostr.13158s0205 5.0kb upstream 5.0kb upstream 5000 false Scaffold13158: 1000286-1005285 Boechera stricta
Bostr.13158s0205 5.0kb downstream 5.0kb downstream 7238 true Scaffold13158: 993048-1000285 Boechera stricta
Bostr.13158s0205 5.0kb downstream 5.0kb downstream 5000 false Scaffold13158: 993048-998047 Boechera stricta
Bostr.13158s0205 10.0kb upstream 10.0kb upstream 12238 true Scaffold13158: 998048-1010285 Boechera stricta
Bostr.13158s0205 10.0kb upstream 10.0kb upstream 10000 false Scaffold13158: 1000286-1010285 Boechera stricta
Bostr.13158s0205 10.0kb downstream 10.0kb downstream 12238 true Scaffold13158: 988048-1000285 Boechera stricta
Bostr.13158s0205 10.0kb downstream 10.0kb downstream 10000 false Scaffold13158: 988048-998047 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375344 5261 Brassicaceae View MSA
123837032 5264 Brassicales-Malvales View MSA
124341232 5266 SBM View MSA
124240471 5268 Malvidae View MSA
124062040 5270 Rosid View MSA
123738490 5271 Pentapetalae View MSA
122794453 5272 Eudicot View MSA
122046584 5273 Angiosperm View MSA
121345424 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain