Gene : Bostr.15697s0308 B. stricta v1.2
Defline:  (1 of 2) PTHR11624:SF76 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED Genomic Order:  308
Name:  ? Bostr.15697s0308 Secondary Identifier:  ? PAC:30662328
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-5173 Boechera stricta pathologic  
Bstricta PWY-5464 Boechera stricta pathologic  
Bstricta PYRUVDEHYD-PWY Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.15697s0308 0.5kb upstream 0.5kb upstream 3124 true Scaffold15697: 1906359-1909482 Boechera stricta
Bostr.15697s0308 0.5kb upstream 0.5kb upstream 500 false Scaffold15697: 1908983-1909482 Boechera stricta
Bostr.15697s0308 0.5kb downstream 0.5kb downstream 3124 true Scaffold15697: 1905859-1908982 Boechera stricta
Bostr.15697s0308 0.5kb downstream 0.5kb downstream 500 false Scaffold15697: 1905859-1906358 Boechera stricta
Bostr.15697s0308 1.0kb upstream 1.0kb upstream 3624 true Scaffold15697: 1906359-1909982 Boechera stricta
Bostr.15697s0308 1.0kb upstream 1.0kb upstream 1000 false Scaffold15697: 1908983-1909982 Boechera stricta
Bostr.15697s0308 1.0kb downstream 1.0kb downstream 3624 true Scaffold15697: 1905359-1908982 Boechera stricta
Bostr.15697s0308 1.0kb downstream 1.0kb downstream 1000 false Scaffold15697: 1905359-1906358 Boechera stricta
Bostr.15697s0308 2.0kb upstream 2.0kb upstream 4624 true Scaffold15697: 1906359-1910982 Boechera stricta
Bostr.15697s0308 2.0kb upstream 2.0kb upstream 2000 false Scaffold15697: 1908983-1910982 Boechera stricta
Bostr.15697s0308 2.0kb downstream 2.0kb downstream 4624 true Scaffold15697: 1904359-1908982 Boechera stricta
Bostr.15697s0308 2.0kb downstream 2.0kb downstream 2000 false Scaffold15697: 1904359-1906358 Boechera stricta
Bostr.15697s0308 5.0kb upstream 5.0kb upstream 7624 true Scaffold15697: 1906359-1913982 Boechera stricta
Bostr.15697s0308 5.0kb upstream 5.0kb upstream 5000 false Scaffold15697: 1908983-1913982 Boechera stricta
Bostr.15697s0308 5.0kb downstream 5.0kb downstream 7624 true Scaffold15697: 1901359-1908982 Boechera stricta
Bostr.15697s0308 5.0kb downstream 5.0kb downstream 5000 false Scaffold15697: 1901359-1906358 Boechera stricta
Bostr.15697s0308 10.0kb upstream 10.0kb upstream 12624 true Scaffold15697: 1906359-1918982 Boechera stricta
Bostr.15697s0308 10.0kb upstream 10.0kb upstream 10000 false Scaffold15697: 1908983-1918982 Boechera stricta
Bostr.15697s0308 10.0kb downstream 10.0kb downstream 12624 true Scaffold15697: 1896359-1908982 Boechera stricta
Bostr.15697s0308 10.0kb downstream 10.0kb downstream 10000 false Scaffold15697: 1896359-1906358 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365093 5261 Brassicaceae View MSA
123840734 5264 Brassicales-Malvales View MSA
124338432 5266 SBM View MSA
124241225 5268 Malvidae View MSA
124062960 5270 Rosid View MSA
123741192 5271 Pentapetalae View MSA
122797029 5272 Eudicot View MSA
122045305 5273 Angiosperm View MSA
121346397 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain