Gene : Bostr.16335s0076 B. stricta v1.2
Defline:  (1 of 2) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  76
Name:  ? Bostr.16335s0076 Secondary Identifier:  ? PAC:30675706
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-1081 Boechera stricta pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.16335s0076 0.5kb upstream 0.5kb upstream 2752 true Scaffold16335: 575393-578144 Boechera stricta
Bostr.16335s0076 0.5kb upstream 0.5kb upstream 500 false Scaffold16335: 577645-578144 Boechera stricta
Bostr.16335s0076 0.5kb downstream 0.5kb downstream 2752 true Scaffold16335: 574893-577644 Boechera stricta
Bostr.16335s0076 0.5kb downstream 0.5kb downstream 500 false Scaffold16335: 574893-575392 Boechera stricta
Bostr.16335s0076 1.0kb upstream 1.0kb upstream 3252 true Scaffold16335: 575393-578644 Boechera stricta
Bostr.16335s0076 1.0kb upstream 1.0kb upstream 1000 false Scaffold16335: 577645-578644 Boechera stricta
Bostr.16335s0076 1.0kb downstream 1.0kb downstream 3252 true Scaffold16335: 574393-577644 Boechera stricta
Bostr.16335s0076 1.0kb downstream 1.0kb downstream 1000 false Scaffold16335: 574393-575392 Boechera stricta
Bostr.16335s0076 2.0kb upstream 2.0kb upstream 4252 true Scaffold16335: 575393-579644 Boechera stricta
Bostr.16335s0076 2.0kb upstream 2.0kb upstream 2000 false Scaffold16335: 577645-579644 Boechera stricta
Bostr.16335s0076 2.0kb downstream 2.0kb downstream 4252 true Scaffold16335: 573393-577644 Boechera stricta
Bostr.16335s0076 2.0kb downstream 2.0kb downstream 2000 false Scaffold16335: 573393-575392 Boechera stricta
Bostr.16335s0076 5.0kb upstream 5.0kb upstream 7252 true Scaffold16335: 575393-582644 Boechera stricta
Bostr.16335s0076 5.0kb upstream 5.0kb upstream 5000 false Scaffold16335: 577645-582644 Boechera stricta
Bostr.16335s0076 5.0kb downstream 5.0kb downstream 7252 true Scaffold16335: 570393-577644 Boechera stricta
Bostr.16335s0076 5.0kb downstream 5.0kb downstream 5000 false Scaffold16335: 570393-575392 Boechera stricta
Bostr.16335s0076 10.0kb upstream 10.0kb upstream 12252 true Scaffold16335: 575393-587644 Boechera stricta
Bostr.16335s0076 10.0kb upstream 10.0kb upstream 10000 false Scaffold16335: 577645-587644 Boechera stricta
Bostr.16335s0076 10.0kb downstream 10.0kb downstream 12252 true Scaffold16335: 565393-577644 Boechera stricta
Bostr.16335s0076 10.0kb downstream 10.0kb downstream 10000 false Scaffold16335: 565393-575392 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376062 5261 Brassicaceae View MSA
123841630 5264 Brassicales-Malvales View MSA
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain