Gene : Bostr.20129s0540 B. stricta v1.2
Defline:  (1 of 1) PTHR23406//PTHR23406:SF11 - MALIC ENZYME-RELATED Genomic Order:  540
Name:  ? Bostr.20129s0540 Secondary Identifier:  ? PAC:30674132
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta GLUCONEO-PWY Boechera stricta pathologic  
Bstricta PWY-241 Boechera stricta pathologic  
Bstricta PWY-7117 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.20129s0540 0.5kb upstream 0.5kb upstream 4848 true Scaffold20129: 2826508-2831355 Boechera stricta
Bostr.20129s0540 0.5kb upstream 0.5kb upstream 500 false Scaffold20129: 2826508-2827007 Boechera stricta
Bostr.20129s0540 0.5kb downstream 0.5kb downstream 4848 true Scaffold20129: 2827008-2831855 Boechera stricta
Bostr.20129s0540 0.5kb downstream 0.5kb downstream 500 false Scaffold20129: 2831356-2831855 Boechera stricta
Bostr.20129s0540 1.0kb upstream 1.0kb upstream 5348 true Scaffold20129: 2826008-2831355 Boechera stricta
Bostr.20129s0540 1.0kb upstream 1.0kb upstream 1000 false Scaffold20129: 2826008-2827007 Boechera stricta
Bostr.20129s0540 1.0kb downstream 1.0kb downstream 5348 true Scaffold20129: 2827008-2832355 Boechera stricta
Bostr.20129s0540 1.0kb downstream 1.0kb downstream 1000 false Scaffold20129: 2831356-2832355 Boechera stricta
Bostr.20129s0540 2.0kb upstream 2.0kb upstream 6348 true Scaffold20129: 2825008-2831355 Boechera stricta
Bostr.20129s0540 2.0kb upstream 2.0kb upstream 2000 false Scaffold20129: 2825008-2827007 Boechera stricta
Bostr.20129s0540 2.0kb downstream 2.0kb downstream 6348 true Scaffold20129: 2827008-2833355 Boechera stricta
Bostr.20129s0540 2.0kb downstream 2.0kb downstream 2000 false Scaffold20129: 2831356-2833355 Boechera stricta
Bostr.20129s0540 5.0kb upstream 5.0kb upstream 9348 true Scaffold20129: 2822008-2831355 Boechera stricta
Bostr.20129s0540 5.0kb upstream 5.0kb upstream 5000 false Scaffold20129: 2822008-2827007 Boechera stricta
Bostr.20129s0540 5.0kb downstream 5.0kb downstream 9348 true Scaffold20129: 2827008-2836355 Boechera stricta
Bostr.20129s0540 5.0kb downstream 5.0kb downstream 5000 false Scaffold20129: 2831356-2836355 Boechera stricta
Bostr.20129s0540 10.0kb upstream 10.0kb upstream 14348 true Scaffold20129: 2817008-2831355 Boechera stricta
Bostr.20129s0540 10.0kb upstream 10.0kb upstream 10000 false Scaffold20129: 2817008-2827007 Boechera stricta
Bostr.20129s0540 10.0kb downstream 10.0kb downstream 14348 true Scaffold20129: 2827008-2841355 Boechera stricta
Bostr.20129s0540 10.0kb downstream 10.0kb downstream 10000 false Scaffold20129: 2831356-2841355 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371392 5261 Brassicaceae View MSA
123831539 5264 Brassicales-Malvales View MSA
124336457 5266 SBM View MSA
124242817 5268 Malvidae View MSA
124068705 5270 Rosid View MSA
123751350 5271 Pentapetalae View MSA
122794130 5272 Eudicot View MSA
122042224 5273 Angiosperm View MSA
121345569 5274 Embryophyte View MSA
123428715 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain