Gene : Bostr.25542s0236 B. stricta v1.2
Defline:  (1 of 1) PTHR11504 - CYTOCHROME C OXIDASE POLYPEPTIDE VIA Genomic Order:  236
Name:  ? Bostr.25542s0236 Secondary Identifier:  ? PAC:30672350
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-3781 Boechera stricta pathologic  
Bstricta PWY-7279 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25542s0236 0.5kb upstream 0.5kb upstream 1738 true Scaffold25542: 1036334-1038071 Boechera stricta
Bostr.25542s0236 0.5kb upstream 0.5kb upstream 500 false Scaffold25542: 1036334-1036833 Boechera stricta
Bostr.25542s0236 0.5kb downstream 0.5kb downstream 1738 true Scaffold25542: 1036834-1038571 Boechera stricta
Bostr.25542s0236 0.5kb downstream 0.5kb downstream 500 false Scaffold25542: 1038072-1038571 Boechera stricta
Bostr.25542s0236 1.0kb upstream 1.0kb upstream 2238 true Scaffold25542: 1035834-1038071 Boechera stricta
Bostr.25542s0236 1.0kb upstream 1.0kb upstream 1000 false Scaffold25542: 1035834-1036833 Boechera stricta
Bostr.25542s0236 1.0kb downstream 1.0kb downstream 2238 true Scaffold25542: 1036834-1039071 Boechera stricta
Bostr.25542s0236 1.0kb downstream 1.0kb downstream 1000 false Scaffold25542: 1038072-1039071 Boechera stricta
Bostr.25542s0236 2.0kb upstream 2.0kb upstream 3238 true Scaffold25542: 1034834-1038071 Boechera stricta
Bostr.25542s0236 2.0kb upstream 2.0kb upstream 2000 false Scaffold25542: 1034834-1036833 Boechera stricta
Bostr.25542s0236 2.0kb downstream 2.0kb downstream 3238 true Scaffold25542: 1036834-1040071 Boechera stricta
Bostr.25542s0236 2.0kb downstream 2.0kb downstream 2000 false Scaffold25542: 1038072-1040071 Boechera stricta
Bostr.25542s0236 5.0kb upstream 5.0kb upstream 6238 true Scaffold25542: 1031834-1038071 Boechera stricta
Bostr.25542s0236 5.0kb upstream 5.0kb upstream 5000 false Scaffold25542: 1031834-1036833 Boechera stricta
Bostr.25542s0236 5.0kb downstream 5.0kb downstream 6238 true Scaffold25542: 1036834-1043071 Boechera stricta
Bostr.25542s0236 5.0kb downstream 5.0kb downstream 5000 false Scaffold25542: 1038072-1043071 Boechera stricta
Bostr.25542s0236 10.0kb upstream 10.0kb upstream 11238 true Scaffold25542: 1026834-1038071 Boechera stricta
Bostr.25542s0236 10.0kb upstream 10.0kb upstream 10000 false Scaffold25542: 1026834-1036833 Boechera stricta
Bostr.25542s0236 10.0kb downstream 10.0kb downstream 11238 true Scaffold25542: 1036834-1048071 Boechera stricta
Bostr.25542s0236 10.0kb downstream 10.0kb downstream 10000 false Scaffold25542: 1038072-1048071 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360303 5261 Brassicaceae View MSA
123835033 5264 Brassicales-Malvales View MSA
124338719 5266 SBM View MSA
124238315 5268 Malvidae View MSA
124061268 5270 Rosid View MSA
123742807 5271 Pentapetalae View MSA
122787280 5272 Eudicot View MSA
122043726 5273 Angiosperm View MSA
121349010 5274 Embryophyte View MSA
123424511 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain