Gene : Bostr.25993s0596 B. stricta v1.2
Defline:  (1 of 2) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED Genomic Order:  596
Name:  ? Bostr.25993s0596 Secondary Identifier:  ? PAC:30668030
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta PWY-1081 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25993s0596 0.5kb upstream 0.5kb upstream 2680 true Scaffold25993: 2903855-2906534 Boechera stricta
Bostr.25993s0596 0.5kb upstream 0.5kb upstream 500 false Scaffold25993: 2903855-2904354 Boechera stricta
Bostr.25993s0596 0.5kb downstream 0.5kb downstream 2680 true Scaffold25993: 2904355-2907034 Boechera stricta
Bostr.25993s0596 0.5kb downstream 0.5kb downstream 500 false Scaffold25993: 2906535-2907034 Boechera stricta
Bostr.25993s0596 1.0kb upstream 1.0kb upstream 3180 true Scaffold25993: 2903355-2906534 Boechera stricta
Bostr.25993s0596 1.0kb upstream 1.0kb upstream 1000 false Scaffold25993: 2903355-2904354 Boechera stricta
Bostr.25993s0596 1.0kb downstream 1.0kb downstream 3180 true Scaffold25993: 2904355-2907534 Boechera stricta
Bostr.25993s0596 1.0kb downstream 1.0kb downstream 1000 false Scaffold25993: 2906535-2907534 Boechera stricta
Bostr.25993s0596 2.0kb upstream 2.0kb upstream 4180 true Scaffold25993: 2902355-2906534 Boechera stricta
Bostr.25993s0596 2.0kb upstream 2.0kb upstream 2000 false Scaffold25993: 2902355-2904354 Boechera stricta
Bostr.25993s0596 2.0kb downstream 2.0kb downstream 4180 true Scaffold25993: 2904355-2908534 Boechera stricta
Bostr.25993s0596 2.0kb downstream 2.0kb downstream 2000 false Scaffold25993: 2906535-2908534 Boechera stricta
Bostr.25993s0596 5.0kb upstream 5.0kb upstream 7180 true Scaffold25993: 2899355-2906534 Boechera stricta
Bostr.25993s0596 5.0kb upstream 5.0kb upstream 5000 false Scaffold25993: 2899355-2904354 Boechera stricta
Bostr.25993s0596 5.0kb downstream 5.0kb downstream 7180 true Scaffold25993: 2904355-2911534 Boechera stricta
Bostr.25993s0596 5.0kb downstream 5.0kb downstream 5000 false Scaffold25993: 2906535-2911534 Boechera stricta
Bostr.25993s0596 10.0kb upstream 10.0kb upstream 12180 true Scaffold25993: 2894355-2906534 Boechera stricta
Bostr.25993s0596 10.0kb upstream 10.0kb upstream 10000 false Scaffold25993: 2894355-2904354 Boechera stricta
Bostr.25993s0596 10.0kb downstream 10.0kb downstream 12180 true Scaffold25993: 2904355-2916534 Boechera stricta
Bostr.25993s0596 10.0kb downstream 10.0kb downstream 10000 false Scaffold25993: 2906535-2916534 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368990 5261 Brassicaceae View MSA
123838007 5264 Brassicales-Malvales View MSA
124346929 5266 SBM View MSA
124251426 5268 Malvidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain