Gene : Bostr.25993s0400 B. stricta v1.2
Defline:  (1 of 2) PTHR10314:SF110 - CYSTEINE SYNTHASE Genomic Order:  400
Name:  ? Bostr.25993s0400 Secondary Identifier:  ? PAC:30667441
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bstricta CYSTSYN-PWY Boechera stricta pathologic  
Bstricta PWY-6936 Boechera stricta pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.25993s0400 0.5kb upstream 0.5kb upstream 3822 true Scaffold25993: 1874128-1877949 Boechera stricta
Bostr.25993s0400 0.5kb upstream 0.5kb upstream 500 false Scaffold25993: 1874128-1874627 Boechera stricta
Bostr.25993s0400 0.5kb downstream 0.5kb downstream 3822 true Scaffold25993: 1874628-1878449 Boechera stricta
Bostr.25993s0400 0.5kb downstream 0.5kb downstream 500 false Scaffold25993: 1877950-1878449 Boechera stricta
Bostr.25993s0400 1.0kb upstream 1.0kb upstream 4322 true Scaffold25993: 1873628-1877949 Boechera stricta
Bostr.25993s0400 1.0kb upstream 1.0kb upstream 1000 false Scaffold25993: 1873628-1874627 Boechera stricta
Bostr.25993s0400 1.0kb downstream 1.0kb downstream 4322 true Scaffold25993: 1874628-1878949 Boechera stricta
Bostr.25993s0400 1.0kb downstream 1.0kb downstream 1000 false Scaffold25993: 1877950-1878949 Boechera stricta
Bostr.25993s0400 2.0kb upstream 2.0kb upstream 5322 true Scaffold25993: 1872628-1877949 Boechera stricta
Bostr.25993s0400 2.0kb upstream 2.0kb upstream 2000 false Scaffold25993: 1872628-1874627 Boechera stricta
Bostr.25993s0400 2.0kb downstream 2.0kb downstream 5322 true Scaffold25993: 1874628-1879949 Boechera stricta
Bostr.25993s0400 2.0kb downstream 2.0kb downstream 2000 false Scaffold25993: 1877950-1879949 Boechera stricta
Bostr.25993s0400 5.0kb upstream 5.0kb upstream 8322 true Scaffold25993: 1869628-1877949 Boechera stricta
Bostr.25993s0400 5.0kb upstream 5.0kb upstream 5000 false Scaffold25993: 1869628-1874627 Boechera stricta
Bostr.25993s0400 5.0kb downstream 5.0kb downstream 8322 true Scaffold25993: 1874628-1882949 Boechera stricta
Bostr.25993s0400 5.0kb downstream 5.0kb downstream 5000 false Scaffold25993: 1877950-1882949 Boechera stricta
Bostr.25993s0400 10.0kb upstream 10.0kb upstream 13322 true Scaffold25993: 1864628-1877949 Boechera stricta
Bostr.25993s0400 10.0kb upstream 10.0kb upstream 10000 false Scaffold25993: 1864628-1874627 Boechera stricta
Bostr.25993s0400 10.0kb downstream 10.0kb downstream 13322 true Scaffold25993: 1874628-1887949 Boechera stricta
Bostr.25993s0400 10.0kb downstream 10.0kb downstream 10000 false Scaffold25993: 1877950-1887949 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377220 5261 Brassicaceae View MSA
123838792 5264 Brassicales-Malvales View MSA
124340029 5266 SBM View MSA
124241185 5268 Malvidae View MSA
124068226 5270 Rosid View MSA
123737517 5271 Pentapetalae View MSA
122787269 5272 Eudicot View MSA
122042312 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain