Gene : Cucsa.369490 C. sativus v1.0
Defline:  (1 of 3) PF03732//PF08284 - Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) Genomic Order:  5
Name:  ? Cucsa.369490 Secondary Identifier:  ? PAC:16981741
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.369490 0.5kb upstream 0.5kb upstream 2131 true scaffold03646: 93553-95683 Cucumis sativus
Cucsa.369490 0.5kb upstream 0.5kb upstream 500 false scaffold03646: 95184-95683 Cucumis sativus
Cucsa.369490 0.5kb downstream 0.5kb downstream 2131 true scaffold03646: 93053-95183 Cucumis sativus
Cucsa.369490 0.5kb downstream 0.5kb downstream 500 false scaffold03646: 93053-93552 Cucumis sativus
Cucsa.369490 1.0kb upstream 1.0kb upstream 2631 true scaffold03646: 93553-96183 Cucumis sativus
Cucsa.369490 1.0kb upstream 1.0kb upstream 1000 false scaffold03646: 95184-96183 Cucumis sativus
Cucsa.369490 1.0kb downstream 1.0kb downstream 2631 true scaffold03646: 92553-95183 Cucumis sativus
Cucsa.369490 1.0kb downstream 1.0kb downstream 1000 false scaffold03646: 92553-93552 Cucumis sativus
Cucsa.369490 2.0kb upstream 2.0kb upstream 3631 true scaffold03646: 93553-97183 Cucumis sativus
Cucsa.369490 2.0kb upstream 2.0kb upstream 2000 false scaffold03646: 95184-97183 Cucumis sativus
Cucsa.369490 2.0kb downstream 2.0kb downstream 3631 true scaffold03646: 91553-95183 Cucumis sativus
Cucsa.369490 2.0kb downstream 2.0kb downstream 2000 false scaffold03646: 91553-93552 Cucumis sativus
Cucsa.369490 5.0kb upstream 5.0kb upstream 6631 true scaffold03646: 93553-100183 Cucumis sativus
Cucsa.369490 5.0kb upstream 5.0kb upstream 5000 false scaffold03646: 95184-100183 Cucumis sativus
Cucsa.369490 5.0kb downstream 5.0kb downstream 6631 true scaffold03646: 88553-95183 Cucumis sativus
Cucsa.369490 5.0kb downstream 5.0kb downstream 5000 false scaffold03646: 88553-93552 Cucumis sativus
Cucsa.369490 10.0kb upstream 10.0kb upstream 11631 true scaffold03646: 93553-105183 Cucumis sativus
Cucsa.369490 10.0kb upstream 10.0kb upstream 10000 false scaffold03646: 95184-105183 Cucumis sativus
Cucsa.369490 10.0kb downstream 10.0kb downstream 11631 true scaffold03646: 83553-95183 Cucumis sativus
Cucsa.369490 10.0kb downstream 10.0kb downstream 10000 false scaffold03646: 83553-93552 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314887 5265 Fabidae View MSA
124073273 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain