Gene : Cucsa.383120 C. sativus v1.0
Defline:  (1 of 1) PF00665//PF03732//PF07727//PF13976 - Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) Genomic Order:  9
Name:  ? Cucsa.383120 Secondary Identifier:  ? PAC:16982327
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.383120 0.5kb upstream 0.5kb upstream 4846 true scaffold03882: 56994-61839 Cucumis sativus
Cucsa.383120 0.5kb upstream 0.5kb upstream 500 false scaffold03882: 56994-57493 Cucumis sativus
Cucsa.383120 0.5kb downstream 0.5kb downstream 4846 true scaffold03882: 57494-62339 Cucumis sativus
Cucsa.383120 0.5kb downstream 0.5kb downstream 500 false scaffold03882: 61840-62339 Cucumis sativus
Cucsa.383120 1.0kb upstream 1.0kb upstream 5346 true scaffold03882: 56494-61839 Cucumis sativus
Cucsa.383120 1.0kb upstream 1.0kb upstream 1000 false scaffold03882: 56494-57493 Cucumis sativus
Cucsa.383120 1.0kb downstream 1.0kb downstream 5346 true scaffold03882: 57494-62839 Cucumis sativus
Cucsa.383120 1.0kb downstream 1.0kb downstream 1000 false scaffold03882: 61840-62839 Cucumis sativus
Cucsa.383120 2.0kb upstream 2.0kb upstream 6346 true scaffold03882: 55494-61839 Cucumis sativus
Cucsa.383120 2.0kb upstream 2.0kb upstream 2000 false scaffold03882: 55494-57493 Cucumis sativus
Cucsa.383120 2.0kb downstream 2.0kb downstream 6346 true scaffold03882: 57494-63839 Cucumis sativus
Cucsa.383120 2.0kb downstream 2.0kb downstream 2000 false scaffold03882: 61840-63839 Cucumis sativus
Cucsa.383120 5.0kb upstream 5.0kb upstream 9346 true scaffold03882: 52494-61839 Cucumis sativus
Cucsa.383120 5.0kb upstream 5.0kb upstream 5000 false scaffold03882: 52494-57493 Cucumis sativus
Cucsa.383120 5.0kb downstream 5.0kb downstream 9346 true scaffold03882: 57494-66839 Cucumis sativus
Cucsa.383120 5.0kb downstream 5.0kb downstream 5000 false scaffold03882: 61840-66839 Cucumis sativus
Cucsa.383120 10.0kb upstream 10.0kb upstream 14346 true scaffold03882: 47494-61839 Cucumis sativus
Cucsa.383120 10.0kb upstream 10.0kb upstream 10000 false scaffold03882: 47494-57493 Cucumis sativus
Cucsa.383120 10.0kb downstream 10.0kb downstream 14346 true scaffold03882: 57494-71839 Cucumis sativus
Cucsa.383120 10.0kb downstream 10.0kb downstream 10000 false scaffold03882: 61840-71839 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782283 5273 Angiosperm View MSA
122237236 5265 Fabidae View MSA
124038233 5270 Rosid View MSA
123752407 5271 Pentapetalae View MSA
122774538 5272 Eudicot View MSA
121053815 5274 Embryophyte View MSA
123093823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain