Gene : Cucsa.379770 C. sativus v1.0
Defline:  (1 of 85) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON Genomic Order:  17
Name:  ? Cucsa.379770 Secondary Identifier:  ? PAC:16982163
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.379770 0.5kb upstream 0.5kb upstream 2197 true scaffold03837: 179789-181985 Cucumis sativus
Cucsa.379770 0.5kb upstream 0.5kb upstream 500 false scaffold03837: 179789-180288 Cucumis sativus
Cucsa.379770 0.5kb downstream 0.5kb downstream 2197 true scaffold03837: 180289-182485 Cucumis sativus
Cucsa.379770 0.5kb downstream 0.5kb downstream 500 false scaffold03837: 181986-182485 Cucumis sativus
Cucsa.379770 1.0kb upstream 1.0kb upstream 2697 true scaffold03837: 179289-181985 Cucumis sativus
Cucsa.379770 1.0kb upstream 1.0kb upstream 1000 false scaffold03837: 179289-180288 Cucumis sativus
Cucsa.379770 1.0kb downstream 1.0kb downstream 2697 true scaffold03837: 180289-182985 Cucumis sativus
Cucsa.379770 1.0kb downstream 1.0kb downstream 1000 false scaffold03837: 181986-182985 Cucumis sativus
Cucsa.379770 2.0kb upstream 2.0kb upstream 3697 true scaffold03837: 178289-181985 Cucumis sativus
Cucsa.379770 2.0kb upstream 2.0kb upstream 2000 false scaffold03837: 178289-180288 Cucumis sativus
Cucsa.379770 2.0kb downstream 2.0kb downstream 3697 true scaffold03837: 180289-183985 Cucumis sativus
Cucsa.379770 2.0kb downstream 2.0kb downstream 2000 false scaffold03837: 181986-183985 Cucumis sativus
Cucsa.379770 5.0kb upstream 5.0kb upstream 6697 true scaffold03837: 175289-181985 Cucumis sativus
Cucsa.379770 5.0kb upstream 5.0kb upstream 5000 false scaffold03837: 175289-180288 Cucumis sativus
Cucsa.379770 5.0kb downstream 5.0kb downstream 6697 true scaffold03837: 180289-186985 Cucumis sativus
Cucsa.379770 5.0kb downstream 5.0kb downstream 5000 false scaffold03837: 181986-186985 Cucumis sativus
Cucsa.379770 10.0kb upstream 10.0kb upstream 11697 true scaffold03837: 170289-181985 Cucumis sativus
Cucsa.379770 10.0kb upstream 10.0kb upstream 10000 false scaffold03837: 170289-180288 Cucumis sativus
Cucsa.379770 10.0kb downstream 10.0kb downstream 11697 true scaffold03837: 180289-191985 Cucumis sativus
Cucsa.379770 10.0kb downstream 10.0kb downstream 10000 false scaffold03837: 181986-191985 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121606120 5273 Angiosperm Singleton cluster - no MSA
122236389 5265 Fabidae Singleton cluster - no MSA
123982599 5270 Rosid Singleton cluster - no MSA
123558274 5271 Pentapetalae Singleton cluster - no MSA
122593088 5272 Eudicot Singleton cluster - no MSA
120878410 5274 Embryophyte Singleton cluster - no MSA
122919299 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain