Gene : Cucsa.052680 C. sativus v1.0
Defline:  (1 of 1) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  12
Name:  ? Cucsa.052680 Secondary Identifier:  ? PAC:16954265
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus PWY-6689 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.052680 0.5kb upstream 0.5kb upstream 1793 true scaffold00577: 157963-159755 Cucumis sativus
Cucsa.052680 0.5kb upstream 0.5kb upstream 500 false scaffold00577: 159256-159755 Cucumis sativus
Cucsa.052680 0.5kb downstream 0.5kb downstream 1793 true scaffold00577: 157463-159255 Cucumis sativus
Cucsa.052680 0.5kb downstream 0.5kb downstream 500 false scaffold00577: 157463-157962 Cucumis sativus
Cucsa.052680 1.0kb upstream 1.0kb upstream 2293 true scaffold00577: 157963-160255 Cucumis sativus
Cucsa.052680 1.0kb upstream 1.0kb upstream 1000 false scaffold00577: 159256-160255 Cucumis sativus
Cucsa.052680 1.0kb downstream 1.0kb downstream 2293 true scaffold00577: 156963-159255 Cucumis sativus
Cucsa.052680 1.0kb downstream 1.0kb downstream 1000 false scaffold00577: 156963-157962 Cucumis sativus
Cucsa.052680 2.0kb upstream 2.0kb upstream 3293 true scaffold00577: 157963-161255 Cucumis sativus
Cucsa.052680 2.0kb upstream 2.0kb upstream 2000 false scaffold00577: 159256-161255 Cucumis sativus
Cucsa.052680 2.0kb downstream 2.0kb downstream 3293 true scaffold00577: 155963-159255 Cucumis sativus
Cucsa.052680 2.0kb downstream 2.0kb downstream 2000 false scaffold00577: 155963-157962 Cucumis sativus
Cucsa.052680 5.0kb upstream 5.0kb upstream 6293 true scaffold00577: 157963-164255 Cucumis sativus
Cucsa.052680 5.0kb upstream 5.0kb upstream 5000 false scaffold00577: 159256-164255 Cucumis sativus
Cucsa.052680 5.0kb downstream 5.0kb downstream 6293 true scaffold00577: 152963-159255 Cucumis sativus
Cucsa.052680 5.0kb downstream 5.0kb downstream 5000 false scaffold00577: 152963-157962 Cucumis sativus
Cucsa.052680 10.0kb upstream 10.0kb upstream 11293 true scaffold00577: 157963-169255 Cucumis sativus
Cucsa.052680 10.0kb upstream 10.0kb upstream 10000 false scaffold00577: 159256-169255 Cucumis sativus
Cucsa.052680 10.0kb downstream 10.0kb downstream 11293 true scaffold00577: 147963-159255 Cucumis sativus
Cucsa.052680 10.0kb downstream 10.0kb downstream 10000 false scaffold00577: 147963-157962 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122306771 5265 Fabidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain