Gene : Cucsa.099870 C. sativus v1.0
Defline:  (1 of 1) PTHR31375:SF11 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  76
Name:  ? Cucsa.099870 Secondary Identifier:  ? PAC:16958482
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus PWY-1081 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.099870 0.5kb upstream 0.5kb upstream 5771 true scaffold00926: 540125-545895 Cucumis sativus
Cucsa.099870 0.5kb upstream 0.5kb upstream 500 false scaffold00926: 545396-545895 Cucumis sativus
Cucsa.099870 0.5kb downstream 0.5kb downstream 5771 true scaffold00926: 539625-545395 Cucumis sativus
Cucsa.099870 0.5kb downstream 0.5kb downstream 500 false scaffold00926: 539625-540124 Cucumis sativus
Cucsa.099870 1.0kb upstream 1.0kb upstream 6271 true scaffold00926: 540125-546395 Cucumis sativus
Cucsa.099870 1.0kb upstream 1.0kb upstream 1000 false scaffold00926: 545396-546395 Cucumis sativus
Cucsa.099870 1.0kb downstream 1.0kb downstream 6271 true scaffold00926: 539125-545395 Cucumis sativus
Cucsa.099870 1.0kb downstream 1.0kb downstream 1000 false scaffold00926: 539125-540124 Cucumis sativus
Cucsa.099870 2.0kb upstream 2.0kb upstream 7271 true scaffold00926: 540125-547395 Cucumis sativus
Cucsa.099870 2.0kb upstream 2.0kb upstream 2000 false scaffold00926: 545396-547395 Cucumis sativus
Cucsa.099870 2.0kb downstream 2.0kb downstream 7271 true scaffold00926: 538125-545395 Cucumis sativus
Cucsa.099870 2.0kb downstream 2.0kb downstream 2000 false scaffold00926: 538125-540124 Cucumis sativus
Cucsa.099870 5.0kb upstream 5.0kb upstream 10271 true scaffold00926: 540125-550395 Cucumis sativus
Cucsa.099870 5.0kb upstream 5.0kb upstream 5000 false scaffold00926: 545396-550395 Cucumis sativus
Cucsa.099870 5.0kb downstream 5.0kb downstream 10271 true scaffold00926: 535125-545395 Cucumis sativus
Cucsa.099870 5.0kb downstream 5.0kb downstream 5000 false scaffold00926: 535125-540124 Cucumis sativus
Cucsa.099870 10.0kb upstream 10.0kb upstream 15271 true scaffold00926: 540125-555395 Cucumis sativus
Cucsa.099870 10.0kb upstream 10.0kb upstream 10000 false scaffold00926: 545396-555395 Cucumis sativus
Cucsa.099870 10.0kb downstream 10.0kb downstream 15271 true scaffold00926: 530125-545395 Cucumis sativus
Cucsa.099870 10.0kb downstream 10.0kb downstream 10000 false scaffold00926: 530125-540124 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122237178 5265 Fabidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain