Gene : Cucsa.117130 C. sativus v1.0
Defline:  (1 of 1) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  104
Name:  ? Cucsa.117130 Secondary Identifier:  ? PAC:16960682
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus CAROTENOID-PWY Cucumis sativus pathologic  
Csativus PWY-5175 Cucumis sativus pathologic  
Csativus PWY-5946 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.117130 0.5kb upstream 0.5kb upstream 5782 true scaffold00995: 826430-832211 Cucumis sativus
Cucsa.117130 0.5kb upstream 0.5kb upstream 500 false scaffold00995: 831712-832211 Cucumis sativus
Cucsa.117130 0.5kb downstream 0.5kb downstream 5782 true scaffold00995: 825930-831711 Cucumis sativus
Cucsa.117130 0.5kb downstream 0.5kb downstream 500 false scaffold00995: 825930-826429 Cucumis sativus
Cucsa.117130 1.0kb upstream 1.0kb upstream 6282 true scaffold00995: 826430-832711 Cucumis sativus
Cucsa.117130 1.0kb upstream 1.0kb upstream 1000 false scaffold00995: 831712-832711 Cucumis sativus
Cucsa.117130 1.0kb downstream 1.0kb downstream 6282 true scaffold00995: 825430-831711 Cucumis sativus
Cucsa.117130 1.0kb downstream 1.0kb downstream 1000 false scaffold00995: 825430-826429 Cucumis sativus
Cucsa.117130 2.0kb upstream 2.0kb upstream 7282 true scaffold00995: 826430-833711 Cucumis sativus
Cucsa.117130 2.0kb upstream 2.0kb upstream 2000 false scaffold00995: 831712-833711 Cucumis sativus
Cucsa.117130 2.0kb downstream 2.0kb downstream 7282 true scaffold00995: 824430-831711 Cucumis sativus
Cucsa.117130 2.0kb downstream 2.0kb downstream 2000 false scaffold00995: 824430-826429 Cucumis sativus
Cucsa.117130 5.0kb upstream 5.0kb upstream 10282 true scaffold00995: 826430-836711 Cucumis sativus
Cucsa.117130 5.0kb upstream 5.0kb upstream 5000 false scaffold00995: 831712-836711 Cucumis sativus
Cucsa.117130 5.0kb downstream 5.0kb downstream 10282 true scaffold00995: 821430-831711 Cucumis sativus
Cucsa.117130 5.0kb downstream 5.0kb downstream 5000 false scaffold00995: 821430-826429 Cucumis sativus
Cucsa.117130 10.0kb upstream 10.0kb upstream 15282 true scaffold00995: 826430-841711 Cucumis sativus
Cucsa.117130 10.0kb upstream 10.0kb upstream 10000 false scaffold00995: 831712-841711 Cucumis sativus
Cucsa.117130 10.0kb downstream 10.0kb downstream 15282 true scaffold00995: 816430-831711 Cucumis sativus
Cucsa.117130 10.0kb downstream 10.0kb downstream 10000 false scaffold00995: 816430-826429 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305319 5265 Fabidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain