Gene : Cucsa.272140 C. sativus v1.0
Defline:  (1 of 1) PF02460//PF16414 - Patched family (Patched) // Niemann-Pick C1 N terminus (NPC1_N) Genomic Order:  111
Name:  ? Cucsa.272140 Secondary Identifier:  ? PAC:16973668
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.272140 0.5kb upstream 0.5kb upstream 15511 true scaffold02500: 819260-834770 Cucumis sativus
Cucsa.272140 0.5kb upstream 0.5kb upstream 500 false scaffold02500: 834271-834770 Cucumis sativus
Cucsa.272140 0.5kb downstream 0.5kb downstream 15511 true scaffold02500: 818760-834270 Cucumis sativus
Cucsa.272140 0.5kb downstream 0.5kb downstream 500 false scaffold02500: 818760-819259 Cucumis sativus
Cucsa.272140 1.0kb upstream 1.0kb upstream 16011 true scaffold02500: 819260-835270 Cucumis sativus
Cucsa.272140 1.0kb upstream 1.0kb upstream 1000 false scaffold02500: 834271-835270 Cucumis sativus
Cucsa.272140 1.0kb downstream 1.0kb downstream 16011 true scaffold02500: 818260-834270 Cucumis sativus
Cucsa.272140 1.0kb downstream 1.0kb downstream 1000 false scaffold02500: 818260-819259 Cucumis sativus
Cucsa.272140 2.0kb upstream 2.0kb upstream 17011 true scaffold02500: 819260-836270 Cucumis sativus
Cucsa.272140 2.0kb upstream 2.0kb upstream 2000 false scaffold02500: 834271-836270 Cucumis sativus
Cucsa.272140 2.0kb downstream 2.0kb downstream 17011 true scaffold02500: 817260-834270 Cucumis sativus
Cucsa.272140 2.0kb downstream 2.0kb downstream 2000 false scaffold02500: 817260-819259 Cucumis sativus
Cucsa.272140 5.0kb upstream 5.0kb upstream 20011 true scaffold02500: 819260-839270 Cucumis sativus
Cucsa.272140 5.0kb upstream 5.0kb upstream 5000 false scaffold02500: 834271-839270 Cucumis sativus
Cucsa.272140 5.0kb downstream 5.0kb downstream 20011 true scaffold02500: 814260-834270 Cucumis sativus
Cucsa.272140 5.0kb downstream 5.0kb downstream 5000 false scaffold02500: 814260-819259 Cucumis sativus
Cucsa.272140 10.0kb upstream 10.0kb upstream 25011 true scaffold02500: 819260-844270 Cucumis sativus
Cucsa.272140 10.0kb upstream 10.0kb upstream 10000 false scaffold02500: 834271-844270 Cucumis sativus
Cucsa.272140 10.0kb downstream 10.0kb downstream 25011 true scaffold02500: 809260-834270 Cucumis sativus
Cucsa.272140 10.0kb downstream 10.0kb downstream 10000 false scaffold02500: 809260-819259 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312597 5265 Fabidae View MSA
124071580 5270 Rosid View MSA
123738357 5271 Pentapetalae View MSA
122785760 5272 Eudicot View MSA
122045765 5273 Angiosperm View MSA
123429105 5275 Viridiplantae View MSA
121349896 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain