Gene : Cre01.g003463 C. reinhardtii v5.6
Defline:  (1 of 1) K08735 - DNA mismatch repair protein MSH2 (MSH2) Genomic Order:  78
Name:  ? Cre01.g003463 Secondary Identifier:  ? PAC:30789210
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre01.g003463 0.5kb upstream 0.5kb upstream 12492 true chromosome_1: 583196-595687 Chlamydomonas reinhardtii
Cre01.g003463 0.5kb upstream 0.5kb upstream 500 false chromosome_1: 583196-583695 Chlamydomonas reinhardtii
Cre01.g003463 0.5kb downstream 0.5kb downstream 12492 true chromosome_1: 583696-596187 Chlamydomonas reinhardtii
Cre01.g003463 0.5kb downstream 0.5kb downstream 500 false chromosome_1: 595688-596187 Chlamydomonas reinhardtii
Cre01.g003463 1.0kb upstream 1.0kb upstream 12992 true chromosome_1: 582696-595687 Chlamydomonas reinhardtii
Cre01.g003463 1.0kb upstream 1.0kb upstream 1000 false chromosome_1: 582696-583695 Chlamydomonas reinhardtii
Cre01.g003463 1.0kb downstream 1.0kb downstream 12992 true chromosome_1: 583696-596687 Chlamydomonas reinhardtii
Cre01.g003463 1.0kb downstream 1.0kb downstream 1000 false chromosome_1: 595688-596687 Chlamydomonas reinhardtii
Cre01.g003463 2.0kb upstream 2.0kb upstream 13992 true chromosome_1: 581696-595687 Chlamydomonas reinhardtii
Cre01.g003463 2.0kb upstream 2.0kb upstream 2000 false chromosome_1: 581696-583695 Chlamydomonas reinhardtii
Cre01.g003463 2.0kb downstream 2.0kb downstream 13992 true chromosome_1: 583696-597687 Chlamydomonas reinhardtii
Cre01.g003463 2.0kb downstream 2.0kb downstream 2000 false chromosome_1: 595688-597687 Chlamydomonas reinhardtii
Cre01.g003463 5.0kb upstream 5.0kb upstream 16992 true chromosome_1: 578696-595687 Chlamydomonas reinhardtii
Cre01.g003463 5.0kb upstream 5.0kb upstream 5000 false chromosome_1: 578696-583695 Chlamydomonas reinhardtii
Cre01.g003463 5.0kb downstream 5.0kb downstream 16992 true chromosome_1: 583696-600687 Chlamydomonas reinhardtii
Cre01.g003463 5.0kb downstream 5.0kb downstream 5000 false chromosome_1: 595688-600687 Chlamydomonas reinhardtii
Cre01.g003463 10.0kb upstream 10.0kb upstream 21992 true chromosome_1: 573696-595687 Chlamydomonas reinhardtii
Cre01.g003463 10.0kb upstream 10.0kb upstream 10000 false chromosome_1: 573696-583695 Chlamydomonas reinhardtii
Cre01.g003463 10.0kb downstream 10.0kb downstream 21992 true chromosome_1: 583696-605687 Chlamydomonas reinhardtii
Cre01.g003463 10.0kb downstream 10.0kb downstream 10000 false chromosome_1: 595688-605687 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108785 5260 Chlorophyte View MSA
123423885 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.109       Low
cufflinks 1.607        
cufflinks 1.802       High
cufflinks 1.291        
cufflinks 0.698        
cufflinks 0.995        
cufflinks 1.902       High
cufflinks 1.853       High
cufflinks 0.142       Low
cufflinks 0.177       Low
cufflinks 1.057        
cufflinks 1.219        
cufflinks 0.836        
cufflinks 0.721        
cufflinks 0.864        
cufflinks 0.21       Low
cufflinks 0.483        
cufflinks 1.034        
cufflinks 0.233       Low
cufflinks 0.916        
cufflinks 0.585        
cufflinks 0.473        
cufflinks 2.191       High
cufflinks 1.249        
cufflinks 0.524        
cufflinks 2.09489 0.259612 3.93017   Low
cufflinks 5.34081 1.32935 9.35228    
cufflinks 4.63714 0.0 9.50847    
cufflinks 4.40279 0.743352 8.06224    
cufflinks 7.01497 1.40692 12.623    

0 Strain