Gene : Cre01.g049350 C. reinhardtii v5.6
Defline:  (1 of 1) PTHR31412//PTHR31412:SF5 - FAMILY NOT NAMED // ZINC METALLOPROTEASE EGY2, CHLOROPLASTIC-RELATED Genomic Order:  1062
Name:  ? Cre01.g049350 Secondary Identifier:  ? PAC:30789015
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre01.g049350 0.5kb upstream 0.5kb upstream 6200 true chromosome_1: 6842295-6848494 Chlamydomonas reinhardtii
Cre01.g049350 0.5kb upstream 0.5kb upstream 500 false chromosome_1: 6847995-6848494 Chlamydomonas reinhardtii
Cre01.g049350 0.5kb downstream 0.5kb downstream 6200 true chromosome_1: 6841795-6847994 Chlamydomonas reinhardtii
Cre01.g049350 0.5kb downstream 0.5kb downstream 500 false chromosome_1: 6841795-6842294 Chlamydomonas reinhardtii
Cre01.g049350 1.0kb upstream 1.0kb upstream 6700 true chromosome_1: 6842295-6848994 Chlamydomonas reinhardtii
Cre01.g049350 1.0kb upstream 1.0kb upstream 1000 false chromosome_1: 6847995-6848994 Chlamydomonas reinhardtii
Cre01.g049350 1.0kb downstream 1.0kb downstream 6700 true chromosome_1: 6841295-6847994 Chlamydomonas reinhardtii
Cre01.g049350 1.0kb downstream 1.0kb downstream 1000 false chromosome_1: 6841295-6842294 Chlamydomonas reinhardtii
Cre01.g049350 2.0kb upstream 2.0kb upstream 7700 true chromosome_1: 6842295-6849994 Chlamydomonas reinhardtii
Cre01.g049350 2.0kb upstream 2.0kb upstream 2000 false chromosome_1: 6847995-6849994 Chlamydomonas reinhardtii
Cre01.g049350 2.0kb downstream 2.0kb downstream 7700 true chromosome_1: 6840295-6847994 Chlamydomonas reinhardtii
Cre01.g049350 2.0kb downstream 2.0kb downstream 2000 false chromosome_1: 6840295-6842294 Chlamydomonas reinhardtii
Cre01.g049350 5.0kb upstream 5.0kb upstream 10700 true chromosome_1: 6842295-6852994 Chlamydomonas reinhardtii
Cre01.g049350 5.0kb upstream 5.0kb upstream 5000 false chromosome_1: 6847995-6852994 Chlamydomonas reinhardtii
Cre01.g049350 5.0kb downstream 5.0kb downstream 10700 true chromosome_1: 6837295-6847994 Chlamydomonas reinhardtii
Cre01.g049350 5.0kb downstream 5.0kb downstream 5000 false chromosome_1: 6837295-6842294 Chlamydomonas reinhardtii
Cre01.g049350 10.0kb upstream 10.0kb upstream 15700 true chromosome_1: 6842295-6857994 Chlamydomonas reinhardtii
Cre01.g049350 10.0kb upstream 10.0kb upstream 10000 false chromosome_1: 6847995-6857994 Chlamydomonas reinhardtii
Cre01.g049350 10.0kb downstream 10.0kb downstream 15700 true chromosome_1: 6832295-6847994 Chlamydomonas reinhardtii
Cre01.g049350 10.0kb downstream 10.0kb downstream 10000 false chromosome_1: 6832295-6842294 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124111281 5260 Chlorophyte View MSA
123425233 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.793        
cufflinks 8.045        
cufflinks 5.899        
cufflinks 6.76        
cufflinks 7.654        
cufflinks 8.022        
cufflinks 4.614        
cufflinks 7.976        
cufflinks 7.511        
cufflinks 3.214       Low
cufflinks 4.89        
cufflinks 7.134        
cufflinks 7.113        
cufflinks 7.595        
cufflinks 5.761        
cufflinks 10.162        
cufflinks 10.703       High
cufflinks 6.256        
cufflinks 0.994       Low
cufflinks 3.745       Low
cufflinks 7.198        
cufflinks 10.369        
cufflinks 3.633       Low
cufflinks 8.17        
cufflinks 10.756       High
cufflinks 9.1197 1.21565 17.0237   Low
cufflinks 8.79075 2.34134 15.2402   Low
cufflinks 18.0853 0.0 36.5172    
cufflinks 8.95994 1.1842 16.7357   Low
cufflinks 12.2533 2.33386 22.1727   High

0 Strain