Gene : FAP52 C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g489750 Defline:  (1 of 1) KOG0318//KOG0319 - WD40 repeat stress protein/actin interacting protein // WD40-repeat-containing subunit of the 18S rRNA processing complex
Genomic Order:  187 Name:  ? Cre12.g489750
Secondary Identifier:  ? PAC:30791845
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g489750 0.5kb upstream 0.5kb upstream 4635 true chromosome_12: 1190448-1195082 Chlamydomonas reinhardtii
Cre12.g489750 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 1194583-1195082 Chlamydomonas reinhardtii
Cre12.g489750 0.5kb downstream 0.5kb downstream 4635 true chromosome_12: 1189948-1194582 Chlamydomonas reinhardtii
Cre12.g489750 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 1189948-1190447 Chlamydomonas reinhardtii
Cre12.g489750 1.0kb upstream 1.0kb upstream 5135 true chromosome_12: 1190448-1195582 Chlamydomonas reinhardtii
Cre12.g489750 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 1194583-1195582 Chlamydomonas reinhardtii
Cre12.g489750 1.0kb downstream 1.0kb downstream 5135 true chromosome_12: 1189448-1194582 Chlamydomonas reinhardtii
Cre12.g489750 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 1189448-1190447 Chlamydomonas reinhardtii
Cre12.g489750 2.0kb upstream 2.0kb upstream 6135 true chromosome_12: 1190448-1196582 Chlamydomonas reinhardtii
Cre12.g489750 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 1194583-1196582 Chlamydomonas reinhardtii
Cre12.g489750 2.0kb downstream 2.0kb downstream 6135 true chromosome_12: 1188448-1194582 Chlamydomonas reinhardtii
Cre12.g489750 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 1188448-1190447 Chlamydomonas reinhardtii
Cre12.g489750 5.0kb upstream 5.0kb upstream 9135 true chromosome_12: 1190448-1199582 Chlamydomonas reinhardtii
Cre12.g489750 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 1194583-1199582 Chlamydomonas reinhardtii
Cre12.g489750 5.0kb downstream 5.0kb downstream 9135 true chromosome_12: 1185448-1194582 Chlamydomonas reinhardtii
Cre12.g489750 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 1185448-1190447 Chlamydomonas reinhardtii
Cre12.g489750 10.0kb upstream 10.0kb upstream 14135 true chromosome_12: 1190448-1204582 Chlamydomonas reinhardtii
Cre12.g489750 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 1194583-1204582 Chlamydomonas reinhardtii
Cre12.g489750 10.0kb downstream 10.0kb downstream 14135 true chromosome_12: 1180448-1194582 Chlamydomonas reinhardtii
Cre12.g489750 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 1180448-1190447 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124109329 5260 Chlorophyte View MSA
123428044 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.446       Low
cufflinks 13.088        
cufflinks 23.814     High High
cufflinks 37.253     High High
cufflinks 8.817        
cufflinks 8.865        
cufflinks 9.744        
cufflinks 16.576     High  
cufflinks 3.668       Low
cufflinks 3.484       Low
cufflinks 62.179     High High
cufflinks 14.213        
cufflinks 4.894        
cufflinks 10.381        
cufflinks 24.345     High High
cufflinks 4.096       Low
cufflinks 5.168        
cufflinks 14.498     High  
cufflinks 2.165       Low
cufflinks 10.477        
cufflinks 21.955     High  
cufflinks 4.876        
cufflinks 10.657        
cufflinks 19.168     High  
cufflinks 3.488       Low
cufflinks 11.8384 1.20282 22.4739    
cufflinks 24.5893 6.49088 42.6878    
cufflinks 26.2372 0.0 53.3229    
cufflinks 16.6738 1.15132 32.1962    
cufflinks 37.3532 4.18054 70.5259 High  

0 Strain