Gene : SSD2 C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g496350 Defline:  (1 of 2) PTHR10796//PTHR10796:SF116 - PATCHED-RELATED // NIEMANN-PICK C1 PROTEIN
Genomic Order:  643 Name:  ? Cre12.g496350
Secondary Identifier:  ? PAC:30792488
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g496350 0.5kb upstream 0.5kb upstream 8422 true chromosome_12: 3448178-3456599 Chlamydomonas reinhardtii
Cre12.g496350 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 3456100-3456599 Chlamydomonas reinhardtii
Cre12.g496350 0.5kb downstream 0.5kb downstream 8422 true chromosome_12: 3447678-3456099 Chlamydomonas reinhardtii
Cre12.g496350 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 3447678-3448177 Chlamydomonas reinhardtii
Cre12.g496350 1.0kb upstream 1.0kb upstream 8922 true chromosome_12: 3448178-3457099 Chlamydomonas reinhardtii
Cre12.g496350 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 3456100-3457099 Chlamydomonas reinhardtii
Cre12.g496350 1.0kb downstream 1.0kb downstream 8922 true chromosome_12: 3447178-3456099 Chlamydomonas reinhardtii
Cre12.g496350 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 3447178-3448177 Chlamydomonas reinhardtii
Cre12.g496350 2.0kb upstream 2.0kb upstream 9922 true chromosome_12: 3448178-3458099 Chlamydomonas reinhardtii
Cre12.g496350 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 3456100-3458099 Chlamydomonas reinhardtii
Cre12.g496350 2.0kb downstream 2.0kb downstream 9922 true chromosome_12: 3446178-3456099 Chlamydomonas reinhardtii
Cre12.g496350 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 3446178-3448177 Chlamydomonas reinhardtii
Cre12.g496350 5.0kb upstream 5.0kb upstream 12922 true chromosome_12: 3448178-3461099 Chlamydomonas reinhardtii
Cre12.g496350 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 3456100-3461099 Chlamydomonas reinhardtii
Cre12.g496350 5.0kb downstream 5.0kb downstream 12922 true chromosome_12: 3443178-3456099 Chlamydomonas reinhardtii
Cre12.g496350 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 3443178-3448177 Chlamydomonas reinhardtii
Cre12.g496350 10.0kb upstream 10.0kb upstream 17922 true chromosome_12: 3448178-3466099 Chlamydomonas reinhardtii
Cre12.g496350 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 3456100-3466099 Chlamydomonas reinhardtii
Cre12.g496350 10.0kb downstream 10.0kb downstream 17922 true chromosome_12: 3438178-3456099 Chlamydomonas reinhardtii
Cre12.g496350 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 3438178-3448177 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124112532 5260 Chlorophyte View MSA
123429105 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.412       Low
cufflinks 0.824        
cufflinks 1.46        
cufflinks 1.51        
cufflinks 0.827        
cufflinks 0.88        
cufflinks 0.801        
cufflinks 1.512        
cufflinks 0.47        
cufflinks 0.135       Low
cufflinks 2.719       High
cufflinks 1.589        
cufflinks 0.913        
cufflinks 1.046        
cufflinks 0.833        
cufflinks 0.521        
cufflinks 0.847        
cufflinks 0.859        
cufflinks 0.387       Low
cufflinks 1.564        
cufflinks 1.214        
cufflinks 0.349       Low
cufflinks 0.681        
cufflinks 2.329       High
cufflinks 0.918        
cufflinks 0.135733 0.0 0.303593 Low Low
cufflinks 2.75657 0.42337 5.08976    
cufflinks 5.10815 0.0 10.3192    
cufflinks 1.40633 0.151913 2.66074    
cufflinks 4.68792 0.924561 8.45128   Low

0 Strain