Gene : SSD3 C. reinhardtii v5.6
Primary Identifier:  ? Cre12.g550900 Defline:  (1 of 1) K12385 - Niemann-Pick C1 protein (NPC1)
Genomic Order:  1487 Name:  ? Cre12.g550900
Secondary Identifier:  ? PAC:30793459
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre12.g550900 0.5kb upstream 0.5kb upstream 14782 true chromosome_12: 8167706-8182487 Chlamydomonas reinhardtii
Cre12.g550900 0.5kb upstream 0.5kb upstream 500 false chromosome_12: 8167706-8168205 Chlamydomonas reinhardtii
Cre12.g550900 0.5kb downstream 0.5kb downstream 14782 true chromosome_12: 8168206-8182987 Chlamydomonas reinhardtii
Cre12.g550900 0.5kb downstream 0.5kb downstream 500 false chromosome_12: 8182488-8182987 Chlamydomonas reinhardtii
Cre12.g550900 1.0kb upstream 1.0kb upstream 15282 true chromosome_12: 8167206-8182487 Chlamydomonas reinhardtii
Cre12.g550900 1.0kb upstream 1.0kb upstream 1000 false chromosome_12: 8167206-8168205 Chlamydomonas reinhardtii
Cre12.g550900 1.0kb downstream 1.0kb downstream 15282 true chromosome_12: 8168206-8183487 Chlamydomonas reinhardtii
Cre12.g550900 1.0kb downstream 1.0kb downstream 1000 false chromosome_12: 8182488-8183487 Chlamydomonas reinhardtii
Cre12.g550900 2.0kb upstream 2.0kb upstream 16282 true chromosome_12: 8166206-8182487 Chlamydomonas reinhardtii
Cre12.g550900 2.0kb upstream 2.0kb upstream 2000 false chromosome_12: 8166206-8168205 Chlamydomonas reinhardtii
Cre12.g550900 2.0kb downstream 2.0kb downstream 16282 true chromosome_12: 8168206-8184487 Chlamydomonas reinhardtii
Cre12.g550900 2.0kb downstream 2.0kb downstream 2000 false chromosome_12: 8182488-8184487 Chlamydomonas reinhardtii
Cre12.g550900 5.0kb upstream 5.0kb upstream 19282 true chromosome_12: 8163206-8182487 Chlamydomonas reinhardtii
Cre12.g550900 5.0kb upstream 5.0kb upstream 5000 false chromosome_12: 8163206-8168205 Chlamydomonas reinhardtii
Cre12.g550900 5.0kb downstream 5.0kb downstream 19282 true chromosome_12: 8168206-8187487 Chlamydomonas reinhardtii
Cre12.g550900 5.0kb downstream 5.0kb downstream 5000 false chromosome_12: 8182488-8187487 Chlamydomonas reinhardtii
Cre12.g550900 10.0kb upstream 10.0kb upstream 24282 true chromosome_12: 8158206-8182487 Chlamydomonas reinhardtii
Cre12.g550900 10.0kb upstream 10.0kb upstream 10000 false chromosome_12: 8158206-8168205 Chlamydomonas reinhardtii
Cre12.g550900 10.0kb downstream 10.0kb downstream 24282 true chromosome_12: 8168206-8192487 Chlamydomonas reinhardtii
Cre12.g550900 10.0kb downstream 10.0kb downstream 10000 false chromosome_12: 8182488-8192487 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124111697 5260 Chlorophyte View MSA
123429105 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.261        
cufflinks 0.559        
cufflinks 0.37        
cufflinks 0.442        
cufflinks 0.478        
cufflinks 0.426        
cufflinks 0.495        
cufflinks 0.601        
cufflinks 0.53        
cufflinks 0.09       Low
cufflinks 0.489        
cufflinks 0.524        
cufflinks 0.259        
cufflinks 0.519        
cufflinks 0.359        
cufflinks 0.496        
cufflinks 0.526        
cufflinks 0.438        
cufflinks 0.049     Low Low
cufflinks 0.624        
cufflinks 0.375        
cufflinks 0.498        
cufflinks 0.368        
cufflinks 0.645        
cufflinks 0.625        
cufflinks 2.51993 0.426866 4.61299   Low
cufflinks 6.61232 1.80479 11.4199   High
cufflinks 3.5594 0.0 7.24453   High
cufflinks 2.51683 0.42607 4.60759    
cufflinks 3.91047 0.782848 7.0381   High

0 Strain