Gene : PCYA1 C. reinhardtii v5.6
Primary Identifier:  ? Cre13.g587100 Defline:  (1 of 1) 1.3.7.5 - Phycocyanobilin:ferredoxin oxidoreductase
Genomic Order:  571 Name:  ? Cre13.g587100
Secondary Identifier:  ? PAC:30784487
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre13.g587100 0.5kb upstream 0.5kb upstream 6639 true chromosome_13: 3398794-3405432 Chlamydomonas reinhardtii
Cre13.g587100 0.5kb upstream 0.5kb upstream 500 false chromosome_13: 3398794-3399293 Chlamydomonas reinhardtii
Cre13.g587100 0.5kb downstream 0.5kb downstream 6639 true chromosome_13: 3399294-3405932 Chlamydomonas reinhardtii
Cre13.g587100 0.5kb downstream 0.5kb downstream 500 false chromosome_13: 3405433-3405932 Chlamydomonas reinhardtii
Cre13.g587100 1.0kb upstream 1.0kb upstream 7139 true chromosome_13: 3398294-3405432 Chlamydomonas reinhardtii
Cre13.g587100 1.0kb upstream 1.0kb upstream 1000 false chromosome_13: 3398294-3399293 Chlamydomonas reinhardtii
Cre13.g587100 1.0kb downstream 1.0kb downstream 7139 true chromosome_13: 3399294-3406432 Chlamydomonas reinhardtii
Cre13.g587100 1.0kb downstream 1.0kb downstream 1000 false chromosome_13: 3405433-3406432 Chlamydomonas reinhardtii
Cre13.g587100 2.0kb upstream 2.0kb upstream 8139 true chromosome_13: 3397294-3405432 Chlamydomonas reinhardtii
Cre13.g587100 2.0kb upstream 2.0kb upstream 2000 false chromosome_13: 3397294-3399293 Chlamydomonas reinhardtii
Cre13.g587100 2.0kb downstream 2.0kb downstream 8139 true chromosome_13: 3399294-3407432 Chlamydomonas reinhardtii
Cre13.g587100 2.0kb downstream 2.0kb downstream 2000 false chromosome_13: 3405433-3407432 Chlamydomonas reinhardtii
Cre13.g587100 5.0kb upstream 5.0kb upstream 11139 true chromosome_13: 3394294-3405432 Chlamydomonas reinhardtii
Cre13.g587100 5.0kb upstream 5.0kb upstream 5000 false chromosome_13: 3394294-3399293 Chlamydomonas reinhardtii
Cre13.g587100 5.0kb downstream 5.0kb downstream 11139 true chromosome_13: 3399294-3410432 Chlamydomonas reinhardtii
Cre13.g587100 5.0kb downstream 5.0kb downstream 5000 false chromosome_13: 3405433-3410432 Chlamydomonas reinhardtii
Cre13.g587100 10.0kb upstream 10.0kb upstream 16139 true chromosome_13: 3389294-3405432 Chlamydomonas reinhardtii
Cre13.g587100 10.0kb upstream 10.0kb upstream 10000 false chromosome_13: 3389294-3399293 Chlamydomonas reinhardtii
Cre13.g587100 10.0kb downstream 10.0kb downstream 16139 true chromosome_13: 3399294-3415432 Chlamydomonas reinhardtii
Cre13.g587100 10.0kb downstream 10.0kb downstream 10000 false chromosome_13: 3405433-3415432 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108796 5260 Chlorophyte View MSA
123422866 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.083     High  
cufflinks 16.454     High  
cufflinks 9.163        
cufflinks 11.293        
cufflinks 15.238     High  
cufflinks 14.421     High  
cufflinks 10.751        
cufflinks 12.596        
cufflinks 18.962     High High
cufflinks 4.634       Low
cufflinks 11.644        
cufflinks 13.641        
cufflinks 5.704       Low
cufflinks 15.071     High  
cufflinks 10.77        
cufflinks 23.445     High High
cufflinks 11.016        
cufflinks 10.367        
cufflinks 2.401       Low
cufflinks 8.97        
cufflinks 11.651        
cufflinks 12.323     High  
cufflinks 9.636        
cufflinks 12.913        
cufflinks 12.418     High  
cufflinks 30.4096 0.878354 59.9409 High High
cufflinks 24.0938 6.4903 41.6973   High
cufflinks 2.56299 0.0 5.75248   Low
cufflinks 11.6467 1.46804 21.8254   Low
cufflinks 15.9177 3.01294 28.8225    

0 Strain