Gene : RPB1 C. reinhardtii v5.6
Primary Identifier:  ? Cre16.g680900 Defline:  (1 of 1) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A)
Genomic Order:  917 Name:  ? Cre16.g680900
Secondary Identifier:  ? PAC:30777306
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre16.g680900 0.5kb upstream 0.5kb upstream 13707 true chromosome_16: 5463885-5477591 Chlamydomonas reinhardtii
Cre16.g680900 0.5kb upstream 0.5kb upstream 500 false chromosome_16: 5477092-5477591 Chlamydomonas reinhardtii
Cre16.g680900 0.5kb downstream 0.5kb downstream 13707 true chromosome_16: 5463385-5477091 Chlamydomonas reinhardtii
Cre16.g680900 0.5kb downstream 0.5kb downstream 500 false chromosome_16: 5463385-5463884 Chlamydomonas reinhardtii
Cre16.g680900 1.0kb upstream 1.0kb upstream 14207 true chromosome_16: 5463885-5478091 Chlamydomonas reinhardtii
Cre16.g680900 1.0kb upstream 1.0kb upstream 1000 false chromosome_16: 5477092-5478091 Chlamydomonas reinhardtii
Cre16.g680900 1.0kb downstream 1.0kb downstream 14207 true chromosome_16: 5462885-5477091 Chlamydomonas reinhardtii
Cre16.g680900 1.0kb downstream 1.0kb downstream 1000 false chromosome_16: 5462885-5463884 Chlamydomonas reinhardtii
Cre16.g680900 2.0kb upstream 2.0kb upstream 15207 true chromosome_16: 5463885-5479091 Chlamydomonas reinhardtii
Cre16.g680900 2.0kb upstream 2.0kb upstream 2000 false chromosome_16: 5477092-5479091 Chlamydomonas reinhardtii
Cre16.g680900 2.0kb downstream 2.0kb downstream 15207 true chromosome_16: 5461885-5477091 Chlamydomonas reinhardtii
Cre16.g680900 2.0kb downstream 2.0kb downstream 2000 false chromosome_16: 5461885-5463884 Chlamydomonas reinhardtii
Cre16.g680900 5.0kb upstream 5.0kb upstream 18207 true chromosome_16: 5463885-5482091 Chlamydomonas reinhardtii
Cre16.g680900 5.0kb upstream 5.0kb upstream 5000 false chromosome_16: 5477092-5482091 Chlamydomonas reinhardtii
Cre16.g680900 5.0kb downstream 5.0kb downstream 18207 true chromosome_16: 5458885-5477091 Chlamydomonas reinhardtii
Cre16.g680900 5.0kb downstream 5.0kb downstream 5000 false chromosome_16: 5458885-5463884 Chlamydomonas reinhardtii
Cre16.g680900 10.0kb upstream 10.0kb upstream 23207 true chromosome_16: 5463885-5487091 Chlamydomonas reinhardtii
Cre16.g680900 10.0kb upstream 10.0kb upstream 10000 false chromosome_16: 5477092-5487091 Chlamydomonas reinhardtii
Cre16.g680900 10.0kb downstream 10.0kb downstream 23207 true chromosome_16: 5453885-5477091 Chlamydomonas reinhardtii
Cre16.g680900 10.0kb downstream 10.0kb downstream 10000 false chromosome_16: 5453885-5463884 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124109020 5260 Chlorophyte View MSA
123424077 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.574       Low
cufflinks 6.258        
cufflinks 5.049        
cufflinks 5.143        
cufflinks 5.222        
cufflinks 4.633        
cufflinks 6.024        
cufflinks 5.696        
cufflinks 3.399        
cufflinks 1.532       Low
cufflinks 5.782        
cufflinks 6.356        
cufflinks 2.066       Low
cufflinks 5.04        
cufflinks 4.271        
cufflinks 3.985        
cufflinks 3.985        
cufflinks 4.679        
cufflinks 1.038       Low
cufflinks 5.738        
cufflinks 4.842        
cufflinks 3.744        
cufflinks 5.679        
cufflinks 5.783        
cufflinks 4.659        
cufflinks 29.7625 0.0 61.0336 High Low
cufflinks 14.8898 3.63474 26.1449    
cufflinks 11.1644 0.0 22.731   Low
cufflinks 11.3435 0.039663 22.6474   Low
cufflinks 14.3257 1.51315 27.1382   High

0 Strain