Gene : Cre16.g680100 C. reinhardtii v5.6
Defline:  (1 of 1) 2.1.1.177 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase / rRNA large subunit methyltransferase H Genomic Order:  934
Name:  ? Cre16.g680100 Secondary Identifier:  ? PAC:30776849
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre16.g680100 0.5kb upstream 0.5kb upstream 3066 true chromosome_16: 5573141-5576206 Chlamydomonas reinhardtii
Cre16.g680100 0.5kb upstream 0.5kb upstream 500 false chromosome_16: 5575707-5576206 Chlamydomonas reinhardtii
Cre16.g680100 0.5kb downstream 0.5kb downstream 3066 true chromosome_16: 5572641-5575706 Chlamydomonas reinhardtii
Cre16.g680100 0.5kb downstream 0.5kb downstream 500 false chromosome_16: 5572641-5573140 Chlamydomonas reinhardtii
Cre16.g680100 1.0kb upstream 1.0kb upstream 3566 true chromosome_16: 5573141-5576706 Chlamydomonas reinhardtii
Cre16.g680100 1.0kb upstream 1.0kb upstream 1000 false chromosome_16: 5575707-5576706 Chlamydomonas reinhardtii
Cre16.g680100 1.0kb downstream 1.0kb downstream 3566 true chromosome_16: 5572141-5575706 Chlamydomonas reinhardtii
Cre16.g680100 1.0kb downstream 1.0kb downstream 1000 false chromosome_16: 5572141-5573140 Chlamydomonas reinhardtii
Cre16.g680100 2.0kb upstream 2.0kb upstream 4566 true chromosome_16: 5573141-5577706 Chlamydomonas reinhardtii
Cre16.g680100 2.0kb upstream 2.0kb upstream 2000 false chromosome_16: 5575707-5577706 Chlamydomonas reinhardtii
Cre16.g680100 2.0kb downstream 2.0kb downstream 4566 true chromosome_16: 5571141-5575706 Chlamydomonas reinhardtii
Cre16.g680100 2.0kb downstream 2.0kb downstream 2000 false chromosome_16: 5571141-5573140 Chlamydomonas reinhardtii
Cre16.g680100 5.0kb upstream 5.0kb upstream 7566 true chromosome_16: 5573141-5580706 Chlamydomonas reinhardtii
Cre16.g680100 5.0kb upstream 5.0kb upstream 5000 false chromosome_16: 5575707-5580706 Chlamydomonas reinhardtii
Cre16.g680100 5.0kb downstream 5.0kb downstream 7566 true chromosome_16: 5568141-5575706 Chlamydomonas reinhardtii
Cre16.g680100 5.0kb downstream 5.0kb downstream 5000 false chromosome_16: 5568141-5573140 Chlamydomonas reinhardtii
Cre16.g680100 10.0kb upstream 10.0kb upstream 12566 true chromosome_16: 5573141-5585706 Chlamydomonas reinhardtii
Cre16.g680100 10.0kb upstream 10.0kb upstream 10000 false chromosome_16: 5575707-5585706 Chlamydomonas reinhardtii
Cre16.g680100 10.0kb downstream 10.0kb downstream 12566 true chromosome_16: 5563141-5575706 Chlamydomonas reinhardtii
Cre16.g680100 10.0kb downstream 10.0kb downstream 10000 false chromosome_16: 5563141-5573140 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110281 5260 Chlorophyte View MSA
123424832 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.061        
cufflinks 1.541       High
cufflinks 0.991        
cufflinks 0.504        
cufflinks 1.34       High
cufflinks 1.292       High
cufflinks 1.165       High
cufflinks 0.624        
cufflinks 0.704        
cufflinks 0.48        
cufflinks 0.72        
cufflinks 0.45        
cufflinks 0.559        
cufflinks 0.995        
cufflinks 0.456        
cufflinks 1.632       High
cufflinks 0.228       Low
cufflinks 0.594        
cufflinks 0.299       Low
cufflinks 0.342        
cufflinks 0.48        
cufflinks 0.217       Low
cufflinks 0.79        
cufflinks 0.494        
cufflinks 0.14       Low
cufflinks 3.43331 0.348761 6.51786   Low
cufflinks 4.16777 0.458562 7.87698   High
cufflinks 0.320716 0.0 1.00884 Low Low
cufflinks 2.22349 0.121064 4.32591   Low
cufflinks 3.07198 0.123825 6.02013   High

0 Strain