Gene : HCD1 C. reinhardtii v5.6
Primary Identifier:  ? Cre16.g695050 Defline:  (1 of 1) 5.1.2.3 - 3-hydroxybutyryl-CoA epimerase
Genomic Order:  27 Name:  ? Cre16.g695050
Secondary Identifier:  ? PAC:30777673
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Sequence Feature Displayer

Ontology Annotation Displayer

11 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii ILEUDEG-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-5136 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-5137 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-5138 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-561 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-6435 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-6837 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-7036 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-735 Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-7606 Chlamydomonas reinhardtii pathologic  
Creinhardtii VALDEG-PWY Chlamydomonas reinhardtii pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre16.g695050 0.5kb upstream 0.5kb upstream 8051 true chromosome_16: 173786-181836 Chlamydomonas reinhardtii
Cre16.g695050 0.5kb upstream 0.5kb upstream 500 false chromosome_16: 173786-174285 Chlamydomonas reinhardtii
Cre16.g695050 0.5kb downstream 0.5kb downstream 8051 true chromosome_16: 174286-182336 Chlamydomonas reinhardtii
Cre16.g695050 0.5kb downstream 0.5kb downstream 500 false chromosome_16: 181837-182336 Chlamydomonas reinhardtii
Cre16.g695050 1.0kb upstream 1.0kb upstream 8551 true chromosome_16: 173286-181836 Chlamydomonas reinhardtii
Cre16.g695050 1.0kb upstream 1.0kb upstream 1000 false chromosome_16: 173286-174285 Chlamydomonas reinhardtii
Cre16.g695050 1.0kb downstream 1.0kb downstream 8551 true chromosome_16: 174286-182836 Chlamydomonas reinhardtii
Cre16.g695050 1.0kb downstream 1.0kb downstream 1000 false chromosome_16: 181837-182836 Chlamydomonas reinhardtii
Cre16.g695050 2.0kb upstream 2.0kb upstream 9551 true chromosome_16: 172286-181836 Chlamydomonas reinhardtii
Cre16.g695050 2.0kb upstream 2.0kb upstream 2000 false chromosome_16: 172286-174285 Chlamydomonas reinhardtii
Cre16.g695050 2.0kb downstream 2.0kb downstream 9551 true chromosome_16: 174286-183836 Chlamydomonas reinhardtii
Cre16.g695050 2.0kb downstream 2.0kb downstream 2000 false chromosome_16: 181837-183836 Chlamydomonas reinhardtii
Cre16.g695050 5.0kb upstream 5.0kb upstream 12551 true chromosome_16: 169286-181836 Chlamydomonas reinhardtii
Cre16.g695050 5.0kb upstream 5.0kb upstream 5000 false chromosome_16: 169286-174285 Chlamydomonas reinhardtii
Cre16.g695050 5.0kb downstream 5.0kb downstream 12551 true chromosome_16: 174286-186836 Chlamydomonas reinhardtii
Cre16.g695050 5.0kb downstream 5.0kb downstream 5000 false chromosome_16: 181837-186836 Chlamydomonas reinhardtii
Cre16.g695050 10.0kb upstream 10.0kb upstream 17551 true chromosome_16: 164286-181836 Chlamydomonas reinhardtii
Cre16.g695050 10.0kb upstream 10.0kb upstream 10000 false chromosome_16: 164286-174285 Chlamydomonas reinhardtii
Cre16.g695050 10.0kb downstream 10.0kb downstream 17551 true chromosome_16: 174286-191836 Chlamydomonas reinhardtii
Cre16.g695050 10.0kb downstream 10.0kb downstream 10000 false chromosome_16: 181837-191836 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124108471 5260 Chlorophyte View MSA
123424743 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.594     High  
cufflinks 24.665     High  
cufflinks 51.886     High High
cufflinks 29.783     High  
cufflinks 24.475     High  
cufflinks 19.231     High  
cufflinks 13.313        
cufflinks 17.463     High  
cufflinks 18.827     High  
cufflinks 11.237     High  
cufflinks 40.162     High High
cufflinks 15.321     High  
cufflinks 23.173     High  
cufflinks 24.888     High  
cufflinks 19.305     High  
cufflinks 16.13     High  
cufflinks 22.84     High  
cufflinks 29.602     High  
cufflinks 4.258       Low
cufflinks 14.781     High  
cufflinks 19.013     High  
cufflinks 14.207     High  
cufflinks 6.554       Low
cufflinks 26.311     High  
cufflinks 12.768     High  
cufflinks 38.1827 0.0 76.8798 High Low
cufflinks 108.665 18.5327 198.798 High  
cufflinks 27.0698 0.0 54.9864 High  
cufflinks 56.7848 0.0 115.726 High  
cufflinks 69.7064 4.20442 135.208 High  

0 Strain