Gene : TIE1 C. reinhardtii v5.6
Primary Identifier:  ? Cre02.g096900 Defline:  (1 of 1) PTHR21227//PTHR21227:SF0 - TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 // TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2
Genomic Order:  650 Name:  ? Cre02.g096900
Secondary Identifier:  ? PAC:30785378
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii PWY-6689 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre02.g096900 0.5kb upstream 0.5kb upstream 5162 true chromosome_2: 3989216-3994377 Chlamydomonas reinhardtii
Cre02.g096900 0.5kb upstream 0.5kb upstream 500 false chromosome_2: 3989216-3989715 Chlamydomonas reinhardtii
Cre02.g096900 0.5kb downstream 0.5kb downstream 5162 true chromosome_2: 3989716-3994877 Chlamydomonas reinhardtii
Cre02.g096900 0.5kb downstream 0.5kb downstream 500 false chromosome_2: 3994378-3994877 Chlamydomonas reinhardtii
Cre02.g096900 1.0kb upstream 1.0kb upstream 5662 true chromosome_2: 3988716-3994377 Chlamydomonas reinhardtii
Cre02.g096900 1.0kb upstream 1.0kb upstream 1000 false chromosome_2: 3988716-3989715 Chlamydomonas reinhardtii
Cre02.g096900 1.0kb downstream 1.0kb downstream 5662 true chromosome_2: 3989716-3995377 Chlamydomonas reinhardtii
Cre02.g096900 1.0kb downstream 1.0kb downstream 1000 false chromosome_2: 3994378-3995377 Chlamydomonas reinhardtii
Cre02.g096900 2.0kb upstream 2.0kb upstream 6662 true chromosome_2: 3987716-3994377 Chlamydomonas reinhardtii
Cre02.g096900 2.0kb upstream 2.0kb upstream 2000 false chromosome_2: 3987716-3989715 Chlamydomonas reinhardtii
Cre02.g096900 2.0kb downstream 2.0kb downstream 6662 true chromosome_2: 3989716-3996377 Chlamydomonas reinhardtii
Cre02.g096900 2.0kb downstream 2.0kb downstream 2000 false chromosome_2: 3994378-3996377 Chlamydomonas reinhardtii
Cre02.g096900 5.0kb upstream 5.0kb upstream 9662 true chromosome_2: 3984716-3994377 Chlamydomonas reinhardtii
Cre02.g096900 5.0kb upstream 5.0kb upstream 5000 false chromosome_2: 3984716-3989715 Chlamydomonas reinhardtii
Cre02.g096900 5.0kb downstream 5.0kb downstream 9662 true chromosome_2: 3989716-3999377 Chlamydomonas reinhardtii
Cre02.g096900 5.0kb downstream 5.0kb downstream 5000 false chromosome_2: 3994378-3999377 Chlamydomonas reinhardtii
Cre02.g096900 10.0kb upstream 10.0kb upstream 14662 true chromosome_2: 3979716-3994377 Chlamydomonas reinhardtii
Cre02.g096900 10.0kb upstream 10.0kb upstream 10000 false chromosome_2: 3979716-3989715 Chlamydomonas reinhardtii
Cre02.g096900 10.0kb downstream 10.0kb downstream 14662 true chromosome_2: 3989716-4004377 Chlamydomonas reinhardtii
Cre02.g096900 10.0kb downstream 10.0kb downstream 10000 false chromosome_2: 3994378-4004377 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124111307 5260 Chlorophyte View MSA
123429143 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.664        
cufflinks 0.897       High
cufflinks 0.488        
cufflinks 0.548        
cufflinks 0.626        
cufflinks 0.687        
cufflinks 0.852        
cufflinks 0.825        
cufflinks 0.723        
cufflinks 0.229       Low
cufflinks 0.435        
cufflinks 0.724        
cufflinks 0.323       Low
cufflinks 0.717        
cufflinks 0.718        
cufflinks 0.904       High
cufflinks 0.53        
cufflinks 0.507        
cufflinks 0.394       Low
cufflinks 1.13       High
cufflinks 0.635        
cufflinks 0.608        
cufflinks 0.661        
cufflinks 0.622        
cufflinks 0.468        
cufflinks 5.74754 0.834293 10.6608   High
cufflinks 8.84682 1.81299 15.8806   High
cufflinks 0.830967 0.0 2.35415    
cufflinks 3.67926 0.34282 7.0157    
cufflinks 6.31979 0.931919 11.7077   High

0 Strain