Gene : TFB4 C. reinhardtii v5.6
Primary Identifier:  ? Cre03.g172050 Defline:  (1 of 1) K03143 - transcription initiation factor TFIIH subunit 3 (TFIIH3, GTF2H3, TFB4)
Genomic Order:  681 Name:  ? Cre03.g172050
Secondary Identifier:  ? PAC:30787444
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre03.g172050 0.5kb upstream 0.5kb upstream 3551 true chromosome_3: 4010225-4013775 Chlamydomonas reinhardtii
Cre03.g172050 0.5kb upstream 0.5kb upstream 500 false chromosome_3: 4013276-4013775 Chlamydomonas reinhardtii
Cre03.g172050 0.5kb downstream 0.5kb downstream 3551 true chromosome_3: 4009725-4013275 Chlamydomonas reinhardtii
Cre03.g172050 0.5kb downstream 0.5kb downstream 500 false chromosome_3: 4009725-4010224 Chlamydomonas reinhardtii
Cre03.g172050 1.0kb upstream 1.0kb upstream 4051 true chromosome_3: 4010225-4014275 Chlamydomonas reinhardtii
Cre03.g172050 1.0kb upstream 1.0kb upstream 1000 false chromosome_3: 4013276-4014275 Chlamydomonas reinhardtii
Cre03.g172050 1.0kb downstream 1.0kb downstream 4051 true chromosome_3: 4009225-4013275 Chlamydomonas reinhardtii
Cre03.g172050 1.0kb downstream 1.0kb downstream 1000 false chromosome_3: 4009225-4010224 Chlamydomonas reinhardtii
Cre03.g172050 2.0kb upstream 2.0kb upstream 5051 true chromosome_3: 4010225-4015275 Chlamydomonas reinhardtii
Cre03.g172050 2.0kb upstream 2.0kb upstream 2000 false chromosome_3: 4013276-4015275 Chlamydomonas reinhardtii
Cre03.g172050 2.0kb downstream 2.0kb downstream 5051 true chromosome_3: 4008225-4013275 Chlamydomonas reinhardtii
Cre03.g172050 2.0kb downstream 2.0kb downstream 2000 false chromosome_3: 4008225-4010224 Chlamydomonas reinhardtii
Cre03.g172050 5.0kb upstream 5.0kb upstream 8051 true chromosome_3: 4010225-4018275 Chlamydomonas reinhardtii
Cre03.g172050 5.0kb upstream 5.0kb upstream 5000 false chromosome_3: 4013276-4018275 Chlamydomonas reinhardtii
Cre03.g172050 5.0kb downstream 5.0kb downstream 8051 true chromosome_3: 4005225-4013275 Chlamydomonas reinhardtii
Cre03.g172050 5.0kb downstream 5.0kb downstream 5000 false chromosome_3: 4005225-4010224 Chlamydomonas reinhardtii
Cre03.g172050 10.0kb upstream 10.0kb upstream 13051 true chromosome_3: 4010225-4023275 Chlamydomonas reinhardtii
Cre03.g172050 10.0kb upstream 10.0kb upstream 10000 false chromosome_3: 4013276-4023275 Chlamydomonas reinhardtii
Cre03.g172050 10.0kb downstream 10.0kb downstream 13051 true chromosome_3: 4000225-4013275 Chlamydomonas reinhardtii
Cre03.g172050 10.0kb downstream 10.0kb downstream 10000 false chromosome_3: 4000225-4010224 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124109021 5260 Chlorophyte View MSA
123426476 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.568       Low
cufflinks 2.799        
cufflinks 3.324        
cufflinks 2.421        
cufflinks 2.44        
cufflinks 3.18        
cufflinks 3.477        
cufflinks 3.829       High
cufflinks 3.289        
cufflinks 2.575        
cufflinks 2.51        
cufflinks 3.758       High
cufflinks 3.259        
cufflinks 3.048        
cufflinks 2.671        
cufflinks 3.581        
cufflinks 2.559        
cufflinks 2.548        
cufflinks 1.989       Low
cufflinks 3.915       High
cufflinks 2.618        
cufflinks 2.779        
cufflinks 3.943       High
cufflinks 3.676       High
cufflinks 2.447        
cufflinks 4.1841 0.447596 7.9206   Low
cufflinks 5.24064 0.699103 9.78218    
cufflinks 2.82122 0.0 6.53385   Low
cufflinks 4.33892 0.504331 8.1735   Low
cufflinks 5.33094 0.632176 10.0297    

0 Strain