Gene : VPS53 C. reinhardtii v5.6
Primary Identifier:  ? Cre06.g259600 Defline:  (1 of 1) PTHR12820 - VACUOLAR SORTING PROTEIN 53
Genomic Order:  257 Name:  ? Cre06.g259600
Secondary Identifier:  ? PAC:30779063
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0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre06.g259600 0.5kb upstream 0.5kb upstream 9353 true chromosome_6: 1486050-1495402 Chlamydomonas reinhardtii
Cre06.g259600 0.5kb upstream 0.5kb upstream 500 false chromosome_6: 1494903-1495402 Chlamydomonas reinhardtii
Cre06.g259600 0.5kb downstream 0.5kb downstream 9353 true chromosome_6: 1485550-1494902 Chlamydomonas reinhardtii
Cre06.g259600 0.5kb downstream 0.5kb downstream 500 false chromosome_6: 1485550-1486049 Chlamydomonas reinhardtii
Cre06.g259600 1.0kb upstream 1.0kb upstream 9853 true chromosome_6: 1486050-1495902 Chlamydomonas reinhardtii
Cre06.g259600 1.0kb upstream 1.0kb upstream 1000 false chromosome_6: 1494903-1495902 Chlamydomonas reinhardtii
Cre06.g259600 1.0kb downstream 1.0kb downstream 9853 true chromosome_6: 1485050-1494902 Chlamydomonas reinhardtii
Cre06.g259600 1.0kb downstream 1.0kb downstream 1000 false chromosome_6: 1485050-1486049 Chlamydomonas reinhardtii
Cre06.g259600 2.0kb upstream 2.0kb upstream 10853 true chromosome_6: 1486050-1496902 Chlamydomonas reinhardtii
Cre06.g259600 2.0kb upstream 2.0kb upstream 2000 false chromosome_6: 1494903-1496902 Chlamydomonas reinhardtii
Cre06.g259600 2.0kb downstream 2.0kb downstream 10853 true chromosome_6: 1484050-1494902 Chlamydomonas reinhardtii
Cre06.g259600 2.0kb downstream 2.0kb downstream 2000 false chromosome_6: 1484050-1486049 Chlamydomonas reinhardtii
Cre06.g259600 5.0kb upstream 5.0kb upstream 13853 true chromosome_6: 1486050-1499902 Chlamydomonas reinhardtii
Cre06.g259600 5.0kb upstream 5.0kb upstream 5000 false chromosome_6: 1494903-1499902 Chlamydomonas reinhardtii
Cre06.g259600 5.0kb downstream 5.0kb downstream 13853 true chromosome_6: 1481050-1494902 Chlamydomonas reinhardtii
Cre06.g259600 5.0kb downstream 5.0kb downstream 5000 false chromosome_6: 1481050-1486049 Chlamydomonas reinhardtii
Cre06.g259600 10.0kb upstream 10.0kb upstream 18853 true chromosome_6: 1486050-1504902 Chlamydomonas reinhardtii
Cre06.g259600 10.0kb upstream 10.0kb upstream 10000 false chromosome_6: 1494903-1504902 Chlamydomonas reinhardtii
Cre06.g259600 10.0kb downstream 10.0kb downstream 18853 true chromosome_6: 1476050-1494902 Chlamydomonas reinhardtii
Cre06.g259600 10.0kb downstream 10.0kb downstream 10000 false chromosome_6: 1476050-1486049 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124110298 5260 Chlorophyte View MSA
123426739 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.13        
cufflinks 2.555        
cufflinks 3.499        
cufflinks 2.849        
cufflinks 0.443       Low
cufflinks 4.145        
cufflinks 2.598        
cufflinks 2.783        
cufflinks 3.745        
cufflinks 3.486        
cufflinks 3.77        
cufflinks 2.101        
cufflinks 3.412        
cufflinks 2.88        
cufflinks 3.301        
cufflinks 2.63        
cufflinks 2.495        
cufflinks 2.86        
cufflinks 3.5        
cufflinks 2.433        
cufflinks 0.731       Low
cufflinks 3.0        
cufflinks 3.386        
cufflinks 1.409       Low
cufflinks 3.224        
cufflinks 11.1052 0.980946 21.2294    
cufflinks 14.6497 3.99393 25.3054    
cufflinks 11.886 0.0 23.8926    
cufflinks 9.40148 0.991498 17.8115    
cufflinks 17.9134 2.85073 32.976    

0 Strain