Gene : HCF136 C. reinhardtii v5.6
Primary Identifier:  ? Cre06.g273700 Defline:  (1 of 1) PTHR32010:SF6 - PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC
Genomic Order:  561 Name:  ? Cre06.g273700
Secondary Identifier:  ? PAC:30778394
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre06.g273700 0.5kb upstream 0.5kb upstream 3942 true chromosome_6: 3005565-3009506 Chlamydomonas reinhardtii
Cre06.g273700 0.5kb upstream 0.5kb upstream 500 false chromosome_6: 3009007-3009506 Chlamydomonas reinhardtii
Cre06.g273700 0.5kb downstream 0.5kb downstream 3942 true chromosome_6: 3005065-3009006 Chlamydomonas reinhardtii
Cre06.g273700 0.5kb downstream 0.5kb downstream 500 false chromosome_6: 3005065-3005564 Chlamydomonas reinhardtii
Cre06.g273700 1.0kb upstream 1.0kb upstream 4442 true chromosome_6: 3005565-3010006 Chlamydomonas reinhardtii
Cre06.g273700 1.0kb upstream 1.0kb upstream 1000 false chromosome_6: 3009007-3010006 Chlamydomonas reinhardtii
Cre06.g273700 1.0kb downstream 1.0kb downstream 4442 true chromosome_6: 3004565-3009006 Chlamydomonas reinhardtii
Cre06.g273700 1.0kb downstream 1.0kb downstream 1000 false chromosome_6: 3004565-3005564 Chlamydomonas reinhardtii
Cre06.g273700 2.0kb upstream 2.0kb upstream 5442 true chromosome_6: 3005565-3011006 Chlamydomonas reinhardtii
Cre06.g273700 2.0kb upstream 2.0kb upstream 2000 false chromosome_6: 3009007-3011006 Chlamydomonas reinhardtii
Cre06.g273700 2.0kb downstream 2.0kb downstream 5442 true chromosome_6: 3003565-3009006 Chlamydomonas reinhardtii
Cre06.g273700 2.0kb downstream 2.0kb downstream 2000 false chromosome_6: 3003565-3005564 Chlamydomonas reinhardtii
Cre06.g273700 5.0kb upstream 5.0kb upstream 8442 true chromosome_6: 3005565-3014006 Chlamydomonas reinhardtii
Cre06.g273700 5.0kb upstream 5.0kb upstream 5000 false chromosome_6: 3009007-3014006 Chlamydomonas reinhardtii
Cre06.g273700 5.0kb downstream 5.0kb downstream 8442 true chromosome_6: 3000565-3009006 Chlamydomonas reinhardtii
Cre06.g273700 5.0kb downstream 5.0kb downstream 5000 false chromosome_6: 3000565-3005564 Chlamydomonas reinhardtii
Cre06.g273700 10.0kb upstream 10.0kb upstream 13442 true chromosome_6: 3005565-3019006 Chlamydomonas reinhardtii
Cre06.g273700 10.0kb upstream 10.0kb upstream 10000 false chromosome_6: 3009007-3019006 Chlamydomonas reinhardtii
Cre06.g273700 10.0kb downstream 10.0kb downstream 13442 true chromosome_6: 2995565-3009006 Chlamydomonas reinhardtii
Cre06.g273700 10.0kb downstream 10.0kb downstream 10000 false chromosome_6: 2995565-3005564 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124109979 5260 Chlorophyte View MSA
123424958 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.042     High  
cufflinks 46.198     High  
cufflinks 47.835     High  
cufflinks 39.797     High  
cufflinks 54.003     High  
cufflinks 53.234     High  
cufflinks 16.148     High Low
cufflinks 39.693     High  
cufflinks 59.704     High  
cufflinks 26.357     High  
cufflinks 43.682     High  
cufflinks 45.785     High  
cufflinks 42.084     High  
cufflinks 64.687     High  
cufflinks 30.671     High  
cufflinks 74.988     High High
cufflinks 62.656     High  
cufflinks 46.893     High  
cufflinks 6.406     High Low
cufflinks 24.264     High  
cufflinks 33.697     High  
cufflinks 53.812     High  
cufflinks 30.342     High  
cufflinks 53.559     High  
cufflinks 59.012     High  
cufflinks 229.315 0.0 468.289 High  
cufflinks 134.423 25.5182 243.327 High  
cufflinks 58.7336 0.0 120.277 High  
cufflinks 62.5646 0.0 126.104 High  
cufflinks 139.386 5.14253 273.63 High  

0 Strain