Gene : Cre07.g351000 C. reinhardtii v5.6
Defline:  (1 of 1) K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Genomic Order:  919
Name:  ? Cre07.g351000 Secondary Identifier:  ? PAC:30774649
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre07.g351000 0.5kb upstream 0.5kb upstream 9163 true chromosome_7: 5500716-5509878 Chlamydomonas reinhardtii
Cre07.g351000 0.5kb upstream 0.5kb upstream 500 false chromosome_7: 5509379-5509878 Chlamydomonas reinhardtii
Cre07.g351000 0.5kb downstream 0.5kb downstream 9163 true chromosome_7: 5500216-5509378 Chlamydomonas reinhardtii
Cre07.g351000 0.5kb downstream 0.5kb downstream 500 false chromosome_7: 5500216-5500715 Chlamydomonas reinhardtii
Cre07.g351000 1.0kb upstream 1.0kb upstream 9663 true chromosome_7: 5500716-5510378 Chlamydomonas reinhardtii
Cre07.g351000 1.0kb upstream 1.0kb upstream 1000 false chromosome_7: 5509379-5510378 Chlamydomonas reinhardtii
Cre07.g351000 1.0kb downstream 1.0kb downstream 9663 true chromosome_7: 5499716-5509378 Chlamydomonas reinhardtii
Cre07.g351000 1.0kb downstream 1.0kb downstream 1000 false chromosome_7: 5499716-5500715 Chlamydomonas reinhardtii
Cre07.g351000 2.0kb upstream 2.0kb upstream 10663 true chromosome_7: 5500716-5511378 Chlamydomonas reinhardtii
Cre07.g351000 2.0kb upstream 2.0kb upstream 2000 false chromosome_7: 5509379-5511378 Chlamydomonas reinhardtii
Cre07.g351000 2.0kb downstream 2.0kb downstream 10663 true chromosome_7: 5498716-5509378 Chlamydomonas reinhardtii
Cre07.g351000 2.0kb downstream 2.0kb downstream 2000 false chromosome_7: 5498716-5500715 Chlamydomonas reinhardtii
Cre07.g351000 5.0kb upstream 5.0kb upstream 13663 true chromosome_7: 5500716-5514378 Chlamydomonas reinhardtii
Cre07.g351000 5.0kb upstream 5.0kb upstream 5000 false chromosome_7: 5509379-5514378 Chlamydomonas reinhardtii
Cre07.g351000 5.0kb downstream 5.0kb downstream 13663 true chromosome_7: 5495716-5509378 Chlamydomonas reinhardtii
Cre07.g351000 5.0kb downstream 5.0kb downstream 5000 false chromosome_7: 5495716-5500715 Chlamydomonas reinhardtii
Cre07.g351000 10.0kb upstream 10.0kb upstream 18663 true chromosome_7: 5500716-5519378 Chlamydomonas reinhardtii
Cre07.g351000 10.0kb upstream 10.0kb upstream 10000 false chromosome_7: 5509379-5519378 Chlamydomonas reinhardtii
Cre07.g351000 10.0kb downstream 10.0kb downstream 18663 true chromosome_7: 5490716-5509378 Chlamydomonas reinhardtii
Cre07.g351000 10.0kb downstream 10.0kb downstream 10000 false chromosome_7: 5490716-5500715 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124112551 5260 Chlorophyte View MSA
123423988 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.845        
cufflinks 3.702       High
cufflinks 2.748        
cufflinks 2.682        
cufflinks 2.913        
cufflinks 2.657        
cufflinks 2.426        
cufflinks 2.851        
cufflinks 2.795        
cufflinks 0.795       Low
cufflinks 2.511        
cufflinks 2.728        
cufflinks 1.426        
cufflinks 3.03        
cufflinks 2.463        
cufflinks 3.203        
cufflinks 1.831        
cufflinks 2.728        
cufflinks 0.422       Low
cufflinks 1.718        
cufflinks 2.498        
cufflinks 2.059        
cufflinks 1.955        
cufflinks 2.319        
cufflinks 1.925        
cufflinks 7.04379 0.813373 13.2742   Low
cufflinks 15.473 4.072 26.874    
cufflinks 6.203 0.0 12.4876    
cufflinks 7.47503 0.83285 14.1172   Low
cufflinks 14.7819 2.26118 27.3026   High

0 Strain