Protein Family : pre-mRNA-processing protein 40A 123423988

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  193

193 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
439648 (1 of 1) PTHR15377 - TRANSCRIPTION FACTOR CA150B RELATED - TCERG1 S. moellendorffii v1.0 3402   scaffold_7: 2756644-2760045
29958.t000001 (1 of 1) K12824 - transcription elongation regulator 1 (TCERG1, CA150) R. communis v0.1 17339   29958: 247158-264496
30099.t000079 (1 of 1) PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 // SUBFAMILY NOT NAMED R. communis v0.1 12566   30099: 382727-395292
30170.t000088 (1 of 1) PTHR11864//PTHR11864:SF0 - PRE-MRNA-PROCESSING PROTEIN PRP40 // PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) R. communis v0.1 8914   30170: 503445-512358
Cucsa.353020 (1 of 2) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 C. sativus v1.0 12561   scaffold03533: 648933-661493
Cucsa.298480 (1 of 2) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 C. sativus v1.0 16220   scaffold02901: 97149-113368
Cucsa.359490 (1 of 1) PTHR15377 - TRANSCRIPTION FACTOR CA150B RELATED - TCERG1 C. sativus v1.0 11800   scaffold03588: 388903-400702
orange1.1g002026m.g (1 of 1) PTHR15377 - TRANSCRIPTION FACTOR CA150B RELATED - TCERG1 C. sinensis v1.1 13165   scaffold00151: 206126-219290
orange1.1g001878m.g (1 of 2) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 C. sinensis v1.1 10665   scaffold00236: 126725-137389
orange1.1g001687m.g (1 of 2) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 C. sinensis v1.1 12275   scaffold00236: 138995-151269
AT3G19840 (1 of 1) K12824 - transcription elongation regulator 1 (TCERG1, CA150) A. thaliana TAIR10 PRP40C 6271   Chr3: 6891086-6897356
AT3G19670 (1 of 2) K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) A. thaliana TAIR10 PRP40B 8521   Chr3: 6828062-6836582
AT1G44910 (1 of 2) K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) A. thaliana TAIR10 PRP40A 7362   Chr1: 16975604-16982965
Thhalv10019995m.g (1 of 2) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 E. salsugineum v1.0 8408   scaffold_13: 2389397-2397804
Thhalv10020134m.g (1 of 1) PTHR15377 - TRANSCRIPTION FACTOR CA150B RELATED - TCERG1 E. salsugineum v1.0 5705   scaffold_13: 2317185-2322889
Thhalv10011212m.g (1 of 2) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 E. salsugineum v1.0 7898   scaffold_7: 10903077-10910974
Ciclev10027732m.g (1 of 2) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 C. clementina v1.0 12304   scaffold_8: 1736191-1748494
Ciclev10027741m.g (1 of 2) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 C. clementina v1.0 13214   scaffold_8: 1721093-1734306
Ciclev10030612m.g (1 of 1) PTHR15377 - TRANSCRIPTION FACTOR CA150B RELATED - TCERG1 C. clementina v1.0 13158   scaffold_4: 18277366-18290523
Lus10012908.g (1 of 2) PTHR15377 - TRANSCRIPTION FACTOR CA150B RELATED - TCERG1 L. usitatissimum v1.0 4573   scaffold1313: 457451-462023
Lus10006142.g (1 of 2) PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 L. usitatissimum v1.0 13384   scaffold141: 164629-178012
Lus10033770.g (1 of 2) PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 L. usitatissimum v1.0 7104   scaffold222: 79433-86536
Lus10018659.g (1 of 2) PTHR11864:SF0 - PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) L. usitatissimum v1.0 9114   scaffold461: 53907-63020
Lus10030562.g (1 of 2) PTHR15377 - TRANSCRIPTION FACTOR CA150B RELATED - TCERG1 L. usitatissimum v1.0 5129   scaffold917: 707217-712345
Lus10007723.g (1 of 2) PTHR11864:SF0 - PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) L. usitatissimum v1.0 8675   scaffold993: 63876-72550
Gorai.002G167700 (1 of 1) PTHR15377 - TRANSCRIPTION FACTOR CA150B RELATED - TCERG1 G. raimondii v2.1 14931   Chr02: 41577286-41592216
Gorai.012G147100 (1 of 1) PTHR11864//PTHR11864:SF21 - PRE-MRNA-PROCESSING PROTEIN PRP40 G. raimondii v2.1 13595   Chr12: 32114790-32128384
Gorai.010G027200 (1 of 1) PTHR11864:SF0 - PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST) G. raimondii v2.1 10603   Chr10: 2185983-2196585
estExt_fgenesh1_pg.C_90156 (1 of 1) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 C. subellipsoidea C-169 v2.0 4678   scaffold_9: 1070474-1075151
estExt_Genemark1.C_110177 (1 of 1) PTHR15377 - TRANSCRIPTION FACTOR CA150B RELATED - TCERG1 C. subellipsoidea C-169 v2.0 6729   scaffold_11: 1015025-1021753

193 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
439648 S. moellendorffii v1.0 123423988 pre-mRNA-processing protein 40A 1 5275 Viridiplantae
30170.m013676 R. communis v0.1 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
30099.m001700 R. communis v0.1 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
29958.m000931 R. communis v0.1 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Cucsa.359490.1 C. sativus v1.0 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Cucsa.353020.1 C. sativus v1.0 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Cucsa.298480.1 C. sativus v1.0 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
orange1.1g002026m C. sinensis v1.1 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
orange1.1g001878m C. sinensis v1.1 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
orange1.1g001687m C. sinensis v1.1 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
AT1G44910.1 A. thaliana TAIR10 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
AT3G19840.1 A. thaliana TAIR10 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
AT3G19670.1 A. thaliana TAIR10 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Thhalv10019995m E. salsugineum v1.0 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Thhalv10020134m E. salsugineum v1.0 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Thhalv10011212m E. salsugineum v1.0 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Ciclev10030612m C. clementina v1.0 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Ciclev10027741m C. clementina v1.0 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Ciclev10027732m C. clementina v1.0 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Lus10030562 L. usitatissimum v1.0 123423988 pre-mRNA-processing protein 40A 6 5275 Viridiplantae
Lus10012908 L. usitatissimum v1.0 123423988 pre-mRNA-processing protein 40A 6 5275 Viridiplantae
Lus10006142 L. usitatissimum v1.0 123423988 pre-mRNA-processing protein 40A 6 5275 Viridiplantae
Lus10033770 L. usitatissimum v1.0 123423988 pre-mRNA-processing protein 40A 6 5275 Viridiplantae
Lus10018659 L. usitatissimum v1.0 123423988 pre-mRNA-processing protein 40A 6 5275 Viridiplantae
Lus10007723 L. usitatissimum v1.0 123423988 pre-mRNA-processing protein 40A 6 5275 Viridiplantae
Gorai.012G147100.1 G. raimondii v2.1 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Gorai.002G167700.1 G. raimondii v2.1 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
Gorai.010G027200.1 G. raimondii v2.1 123423988 pre-mRNA-processing protein 40A 3 5275 Viridiplantae
47676 C. subellipsoidea C-169 v2.0 123423988 pre-mRNA-processing protein 40A 2 5275 Viridiplantae
66735 C. subellipsoidea C-169 v2.0 123423988 pre-mRNA-processing protein 40A 2 5275 Viridiplantae