Gene : PRP40C A. thaliana TAIR10
Primary Identifier:  ? AT3G19840 Defline:  (1 of 1) K12824 - transcription elongation regulator 1 (TCERG1, CA150)
Genomic Order:  2060 Name:  ? AT3G19840
Secondary Identifier:  ? PAC:19659379
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G19840 0.5kb upstream 0.5kb upstream 6771 true Chr3: 6890586-6897356 Arabidopsis thaliana
AT3G19840 0.5kb upstream 0.5kb upstream 500 false Chr3: 6890586-6891085 Arabidopsis thaliana
AT3G19840 0.5kb downstream 0.5kb downstream 6771 true Chr3: 6891086-6897856 Arabidopsis thaliana
AT3G19840 0.5kb downstream 0.5kb downstream 500 false Chr3: 6897357-6897856 Arabidopsis thaliana
AT3G19840 1.0kb upstream 1.0kb upstream 7271 true Chr3: 6890086-6897356 Arabidopsis thaliana
AT3G19840 1.0kb upstream 1.0kb upstream 1000 false Chr3: 6890086-6891085 Arabidopsis thaliana
AT3G19840 1.0kb downstream 1.0kb downstream 7271 true Chr3: 6891086-6898356 Arabidopsis thaliana
AT3G19840 1.0kb downstream 1.0kb downstream 1000 false Chr3: 6897357-6898356 Arabidopsis thaliana
AT3G19840 2.0kb upstream 2.0kb upstream 8271 true Chr3: 6889086-6897356 Arabidopsis thaliana
AT3G19840 2.0kb upstream 2.0kb upstream 2000 false Chr3: 6889086-6891085 Arabidopsis thaliana
AT3G19840 2.0kb downstream 2.0kb downstream 8271 true Chr3: 6891086-6899356 Arabidopsis thaliana
AT3G19840 2.0kb downstream 2.0kb downstream 2000 false Chr3: 6897357-6899356 Arabidopsis thaliana
AT3G19840 5.0kb upstream 5.0kb upstream 11271 true Chr3: 6886086-6897356 Arabidopsis thaliana
AT3G19840 5.0kb upstream 5.0kb upstream 5000 false Chr3: 6886086-6891085 Arabidopsis thaliana
AT3G19840 5.0kb downstream 5.0kb downstream 11271 true Chr3: 6891086-6902356 Arabidopsis thaliana
AT3G19840 5.0kb downstream 5.0kb downstream 5000 false Chr3: 6897357-6902356 Arabidopsis thaliana
AT3G19840 10.0kb upstream 10.0kb upstream 16271 true Chr3: 6881086-6897356 Arabidopsis thaliana
AT3G19840 10.0kb upstream 10.0kb upstream 10000 false Chr3: 6881086-6891085 Arabidopsis thaliana
AT3G19840 10.0kb downstream 10.0kb downstream 16271 true Chr3: 6891086-6907356 Arabidopsis thaliana
AT3G19840 10.0kb downstream 10.0kb downstream 10000 false Chr3: 6897357-6907356 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370713 5261 Brassicaceae View MSA
123827635 5264 Brassicales-Malvales View MSA
124343443 5266 SBM View MSA
124249754 5268 Malvidae View MSA
124068165 5270 Rosid View MSA
123739157 5271 Pentapetalae View MSA
122793255 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.659        
cufflinks 6.748       High
cufflinks 3.58        
cufflinks 6.391        
cufflinks 3.663        
cufflinks 6.058        

0 Strain