Gene : SHKD1 C. reinhardtii v5.6
Primary Identifier:  ? Cre08.g380201 Defline:  (1 of 1) 1.1.1.25//4.2.1.10 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase // 3-dehydroquinate dehydratase
Genomic Order:  593 Name:  ? Cre08.g380201
Secondary Identifier:  ? PAC:30773877
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Creinhardtii ARO-PWY Chlamydomonas reinhardtii pathologic  
Creinhardtii PWY-6163 Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre08.g380201 0.5kb upstream 0.5kb upstream 6922 true chromosome_8: 4192220-4199141 Chlamydomonas reinhardtii
Cre08.g380201 0.5kb upstream 0.5kb upstream 500 false chromosome_8: 4192220-4192719 Chlamydomonas reinhardtii
Cre08.g380201 0.5kb downstream 0.5kb downstream 6922 true chromosome_8: 4192720-4199641 Chlamydomonas reinhardtii
Cre08.g380201 0.5kb downstream 0.5kb downstream 500 false chromosome_8: 4199142-4199641 Chlamydomonas reinhardtii
Cre08.g380201 1.0kb upstream 1.0kb upstream 7422 true chromosome_8: 4191720-4199141 Chlamydomonas reinhardtii
Cre08.g380201 1.0kb upstream 1.0kb upstream 1000 false chromosome_8: 4191720-4192719 Chlamydomonas reinhardtii
Cre08.g380201 1.0kb downstream 1.0kb downstream 7422 true chromosome_8: 4192720-4200141 Chlamydomonas reinhardtii
Cre08.g380201 1.0kb downstream 1.0kb downstream 1000 false chromosome_8: 4199142-4200141 Chlamydomonas reinhardtii
Cre08.g380201 2.0kb upstream 2.0kb upstream 8422 true chromosome_8: 4190720-4199141 Chlamydomonas reinhardtii
Cre08.g380201 2.0kb upstream 2.0kb upstream 2000 false chromosome_8: 4190720-4192719 Chlamydomonas reinhardtii
Cre08.g380201 2.0kb downstream 2.0kb downstream 8422 true chromosome_8: 4192720-4201141 Chlamydomonas reinhardtii
Cre08.g380201 2.0kb downstream 2.0kb downstream 2000 false chromosome_8: 4199142-4201141 Chlamydomonas reinhardtii
Cre08.g380201 5.0kb upstream 5.0kb upstream 11422 true chromosome_8: 4187720-4199141 Chlamydomonas reinhardtii
Cre08.g380201 5.0kb upstream 5.0kb upstream 5000 false chromosome_8: 4187720-4192719 Chlamydomonas reinhardtii
Cre08.g380201 5.0kb downstream 5.0kb downstream 11422 true chromosome_8: 4192720-4204141 Chlamydomonas reinhardtii
Cre08.g380201 5.0kb downstream 5.0kb downstream 5000 false chromosome_8: 4199142-4204141 Chlamydomonas reinhardtii
Cre08.g380201 10.0kb upstream 10.0kb upstream 16422 true chromosome_8: 4182720-4199141 Chlamydomonas reinhardtii
Cre08.g380201 10.0kb upstream 10.0kb upstream 10000 false chromosome_8: 4182720-4192719 Chlamydomonas reinhardtii
Cre08.g380201 10.0kb downstream 10.0kb downstream 16422 true chromosome_8: 4192720-4209141 Chlamydomonas reinhardtii
Cre08.g380201 10.0kb downstream 10.0kb downstream 10000 false chromosome_8: 4199142-4209141 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124109656 5260 Chlorophyte View MSA
123427556 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.585        
cufflinks 4.008        
cufflinks 1.702        
cufflinks 2.624        
cufflinks 3.834        
cufflinks 3.294        
cufflinks 1.385        
cufflinks 2.628        
cufflinks 5.701       High
cufflinks 0.754       Low
cufflinks 2.5        
cufflinks 2.858        
cufflinks 0.945       Low
cufflinks 3.509        
cufflinks 2.192        
cufflinks 7.014       High
cufflinks 4.806        
cufflinks 2.457        
cufflinks 0.181       Low
cufflinks 0.908       Low
cufflinks 2.451        
cufflinks 5.154        
cufflinks 1.186        
cufflinks 2.845        
cufflinks 5.279        
cufflinks 10.5545 1.36901 19.7399   Low
cufflinks 29.5778 7.51164 51.6439 High  
cufflinks 1.63879 0.0 3.84108   Low
cufflinks 6.53966 1.08808 11.9912   Low
cufflinks 16.2863 3.0038 29.5687   High

0 Strain