Gene : Cre09.g407900 C. reinhardtii v5.6
Defline:  (1 of 1) PTHR11061//PTHR11061:SF15 - RNA M5U METHYLTRANSFERASE FAMILY // SUBFAMILY NOT NAMED Genomic Order:  983
Name:  ? Cre09.g407900 Secondary Identifier:  ? PAC:30780943
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre09.g407900 0.5kb upstream 0.5kb upstream 6782 true chromosome_9: 6544758-6551539 Chlamydomonas reinhardtii
Cre09.g407900 0.5kb upstream 0.5kb upstream 500 false chromosome_9: 6544758-6545257 Chlamydomonas reinhardtii
Cre09.g407900 0.5kb downstream 0.5kb downstream 6782 true chromosome_9: 6545258-6552039 Chlamydomonas reinhardtii
Cre09.g407900 0.5kb downstream 0.5kb downstream 500 false chromosome_9: 6551540-6552039 Chlamydomonas reinhardtii
Cre09.g407900 1.0kb upstream 1.0kb upstream 7282 true chromosome_9: 6544258-6551539 Chlamydomonas reinhardtii
Cre09.g407900 1.0kb upstream 1.0kb upstream 1000 false chromosome_9: 6544258-6545257 Chlamydomonas reinhardtii
Cre09.g407900 1.0kb downstream 1.0kb downstream 7282 true chromosome_9: 6545258-6552539 Chlamydomonas reinhardtii
Cre09.g407900 1.0kb downstream 1.0kb downstream 1000 false chromosome_9: 6551540-6552539 Chlamydomonas reinhardtii
Cre09.g407900 2.0kb upstream 2.0kb upstream 8282 true chromosome_9: 6543258-6551539 Chlamydomonas reinhardtii
Cre09.g407900 2.0kb upstream 2.0kb upstream 2000 false chromosome_9: 6543258-6545257 Chlamydomonas reinhardtii
Cre09.g407900 2.0kb downstream 2.0kb downstream 8282 true chromosome_9: 6545258-6553539 Chlamydomonas reinhardtii
Cre09.g407900 2.0kb downstream 2.0kb downstream 2000 false chromosome_9: 6551540-6553539 Chlamydomonas reinhardtii
Cre09.g407900 5.0kb upstream 5.0kb upstream 11282 true chromosome_9: 6540258-6551539 Chlamydomonas reinhardtii
Cre09.g407900 5.0kb upstream 5.0kb upstream 5000 false chromosome_9: 6540258-6545257 Chlamydomonas reinhardtii
Cre09.g407900 5.0kb downstream 5.0kb downstream 11282 true chromosome_9: 6545258-6556539 Chlamydomonas reinhardtii
Cre09.g407900 5.0kb downstream 5.0kb downstream 5000 false chromosome_9: 6551540-6556539 Chlamydomonas reinhardtii
Cre09.g407900 10.0kb upstream 10.0kb upstream 16282 true chromosome_9: 6535258-6551539 Chlamydomonas reinhardtii
Cre09.g407900 10.0kb upstream 10.0kb upstream 10000 false chromosome_9: 6535258-6545257 Chlamydomonas reinhardtii
Cre09.g407900 10.0kb downstream 10.0kb downstream 16282 true chromosome_9: 6545258-6561539 Chlamydomonas reinhardtii
Cre09.g407900 10.0kb downstream 10.0kb downstream 10000 false chromosome_9: 6551540-6561539 Chlamydomonas reinhardtii

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124111191 5260 Chlorophyte View MSA
123426103 5275 Viridiplantae View MSA

133 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.837        
cufflinks 1.55        
cufflinks 0.817        
cufflinks 0.695        
cufflinks 1.25        
cufflinks 1.366        
cufflinks 1.268        
cufflinks 0.81        
cufflinks 0.991        
cufflinks 0.57        
cufflinks 1.215        
cufflinks 1.003        
cufflinks 0.593        
cufflinks 1.522        
cufflinks 0.694        
cufflinks 1.912       High
cufflinks 0.02     Low Low
cufflinks 0.678        
cufflinks 0.425        
cufflinks 0.762        
cufflinks 0.789        
cufflinks 0.12       Low
cufflinks 1.13        
cufflinks 0.86        
cufflinks 0.079     Low Low
cufflinks 2.51342 0.295483 4.73135    
cufflinks 2.81804 0.428693 5.20739    
cufflinks 0.0757139 0.0 0.294019 Low  
cufflinks 2.98789 0.424015 5.55176    
cufflinks 9.03838 1.81605 16.2607   High

0 Strain