Gene : Cucsa.183390 C. sativus v1.0
Defline:  (1 of 2) PF00078//PF00665//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retroviral aspartyl protease (RVP_2) Genomic Order:  12
Name:  ? Cucsa.183390 Secondary Identifier:  ? PAC:16967516
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.183390 0.5kb upstream 0.5kb upstream 4426 true scaffold01261: 262035-266460 Cucumis sativus
Cucsa.183390 0.5kb upstream 0.5kb upstream 500 false scaffold01261: 265961-266460 Cucumis sativus
Cucsa.183390 0.5kb downstream 0.5kb downstream 4426 true scaffold01261: 261535-265960 Cucumis sativus
Cucsa.183390 0.5kb downstream 0.5kb downstream 500 false scaffold01261: 261535-262034 Cucumis sativus
Cucsa.183390 1.0kb upstream 1.0kb upstream 4926 true scaffold01261: 262035-266960 Cucumis sativus
Cucsa.183390 1.0kb upstream 1.0kb upstream 1000 false scaffold01261: 265961-266960 Cucumis sativus
Cucsa.183390 1.0kb downstream 1.0kb downstream 4926 true scaffold01261: 261035-265960 Cucumis sativus
Cucsa.183390 1.0kb downstream 1.0kb downstream 1000 false scaffold01261: 261035-262034 Cucumis sativus
Cucsa.183390 2.0kb upstream 2.0kb upstream 5926 true scaffold01261: 262035-267960 Cucumis sativus
Cucsa.183390 2.0kb upstream 2.0kb upstream 2000 false scaffold01261: 265961-267960 Cucumis sativus
Cucsa.183390 2.0kb downstream 2.0kb downstream 5926 true scaffold01261: 260035-265960 Cucumis sativus
Cucsa.183390 2.0kb downstream 2.0kb downstream 2000 false scaffold01261: 260035-262034 Cucumis sativus
Cucsa.183390 5.0kb upstream 5.0kb upstream 8926 true scaffold01261: 262035-270960 Cucumis sativus
Cucsa.183390 5.0kb upstream 5.0kb upstream 5000 false scaffold01261: 265961-270960 Cucumis sativus
Cucsa.183390 5.0kb downstream 5.0kb downstream 8926 true scaffold01261: 257035-265960 Cucumis sativus
Cucsa.183390 5.0kb downstream 5.0kb downstream 5000 false scaffold01261: 257035-262034 Cucumis sativus
Cucsa.183390 10.0kb upstream 10.0kb upstream 13926 true scaffold01261: 262035-275960 Cucumis sativus
Cucsa.183390 10.0kb upstream 10.0kb upstream 10000 false scaffold01261: 265961-275960 Cucumis sativus
Cucsa.183390 10.0kb downstream 10.0kb downstream 13926 true scaffold01261: 252035-265960 Cucumis sativus
Cucsa.183390 10.0kb downstream 10.0kb downstream 10000 false scaffold01261: 252035-262034 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121606514 5273 Angiosperm View MSA
122236784 5265 Fabidae View MSA
123982994 5270 Rosid View MSA
123558668 5271 Pentapetalae View MSA
122593482 5272 Eudicot View MSA
120878804 5274 Embryophyte View MSA
122919693 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain