Gene : Cucsa.261680 C. sativus v1.0
Defline:  (1 of 1) PF00665//PF07727//PF13976//PF14223 - Integrase core domain (rve) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  6
Name:  ? Cucsa.261680 Secondary Identifier:  ? PAC:16973206
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.261680 0.5kb upstream 0.5kb upstream 5098 true scaffold02265: 108552-113649 Cucumis sativus
Cucsa.261680 0.5kb upstream 0.5kb upstream 500 false scaffold02265: 108552-109051 Cucumis sativus
Cucsa.261680 0.5kb downstream 0.5kb downstream 5098 true scaffold02265: 109052-114149 Cucumis sativus
Cucsa.261680 0.5kb downstream 0.5kb downstream 500 false scaffold02265: 113650-114149 Cucumis sativus
Cucsa.261680 1.0kb upstream 1.0kb upstream 5598 true scaffold02265: 108052-113649 Cucumis sativus
Cucsa.261680 1.0kb upstream 1.0kb upstream 1000 false scaffold02265: 108052-109051 Cucumis sativus
Cucsa.261680 1.0kb downstream 1.0kb downstream 5598 true scaffold02265: 109052-114649 Cucumis sativus
Cucsa.261680 1.0kb downstream 1.0kb downstream 1000 false scaffold02265: 113650-114649 Cucumis sativus
Cucsa.261680 2.0kb upstream 2.0kb upstream 6598 true scaffold02265: 107052-113649 Cucumis sativus
Cucsa.261680 2.0kb upstream 2.0kb upstream 2000 false scaffold02265: 107052-109051 Cucumis sativus
Cucsa.261680 2.0kb downstream 2.0kb downstream 6598 true scaffold02265: 109052-115649 Cucumis sativus
Cucsa.261680 2.0kb downstream 2.0kb downstream 2000 false scaffold02265: 113650-115649 Cucumis sativus
Cucsa.261680 5.0kb upstream 5.0kb upstream 9598 true scaffold02265: 104052-113649 Cucumis sativus
Cucsa.261680 5.0kb upstream 5.0kb upstream 5000 false scaffold02265: 104052-109051 Cucumis sativus
Cucsa.261680 5.0kb downstream 5.0kb downstream 9598 true scaffold02265: 109052-118649 Cucumis sativus
Cucsa.261680 5.0kb downstream 5.0kb downstream 5000 false scaffold02265: 113650-118649 Cucumis sativus
Cucsa.261680 10.0kb upstream 10.0kb upstream 14598 true scaffold02265: 99052-113649 Cucumis sativus
Cucsa.261680 10.0kb upstream 10.0kb upstream 10000 false scaffold02265: 99052-109051 Cucumis sativus
Cucsa.261680 10.0kb downstream 10.0kb downstream 14598 true scaffold02265: 109052-123649 Cucumis sativus
Cucsa.261680 10.0kb downstream 10.0kb downstream 10000 false scaffold02265: 113650-123649 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121606386 5273 Angiosperm View MSA
122236656 5265 Fabidae View MSA
123982866 5270 Rosid View MSA
123558540 5271 Pentapetalae View MSA
122593354 5272 Eudicot View MSA
120878676 5274 Embryophyte View MSA
122919565 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain