Gene : Cucsa.265830 C. sativus v1.0
Defline:  (1 of 2) PF00098//PF14227 - Zinc knuckle (zf-CCHC) // gag-polypeptide of LTR copia-type (UBN2_2) Genomic Order:  25
Name:  ? Cucsa.265830 Secondary Identifier:  ? PAC:16973313
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.265830 0.5kb upstream 0.5kb upstream 1370 true scaffold02352: 271363-272732 Cucumis sativus
Cucsa.265830 0.5kb upstream 0.5kb upstream 500 false scaffold02352: 272233-272732 Cucumis sativus
Cucsa.265830 0.5kb downstream 0.5kb downstream 1370 true scaffold02352: 270863-272232 Cucumis sativus
Cucsa.265830 0.5kb downstream 0.5kb downstream 500 false scaffold02352: 270863-271362 Cucumis sativus
Cucsa.265830 1.0kb upstream 1.0kb upstream 1870 true scaffold02352: 271363-273232 Cucumis sativus
Cucsa.265830 1.0kb upstream 1.0kb upstream 1000 false scaffold02352: 272233-273232 Cucumis sativus
Cucsa.265830 1.0kb downstream 1.0kb downstream 1870 true scaffold02352: 270363-272232 Cucumis sativus
Cucsa.265830 1.0kb downstream 1.0kb downstream 1000 false scaffold02352: 270363-271362 Cucumis sativus
Cucsa.265830 2.0kb upstream 2.0kb upstream 2870 true scaffold02352: 271363-274232 Cucumis sativus
Cucsa.265830 2.0kb upstream 2.0kb upstream 2000 false scaffold02352: 272233-274232 Cucumis sativus
Cucsa.265830 2.0kb downstream 2.0kb downstream 2870 true scaffold02352: 269363-272232 Cucumis sativus
Cucsa.265830 2.0kb downstream 2.0kb downstream 2000 false scaffold02352: 269363-271362 Cucumis sativus
Cucsa.265830 5.0kb upstream 5.0kb upstream 5870 true scaffold02352: 271363-277232 Cucumis sativus
Cucsa.265830 5.0kb upstream 5.0kb upstream 5000 false scaffold02352: 272233-277232 Cucumis sativus
Cucsa.265830 5.0kb downstream 5.0kb downstream 5870 true scaffold02352: 266363-272232 Cucumis sativus
Cucsa.265830 5.0kb downstream 5.0kb downstream 5000 false scaffold02352: 266363-271362 Cucumis sativus
Cucsa.265830 10.0kb upstream 10.0kb upstream 10870 true scaffold02352: 271363-282232 Cucumis sativus
Cucsa.265830 10.0kb upstream 10.0kb upstream 10000 false scaffold02352: 272233-282232 Cucumis sativus
Cucsa.265830 10.0kb downstream 10.0kb downstream 10870 true scaffold02352: 261363-272232 Cucumis sativus
Cucsa.265830 10.0kb downstream 10.0kb downstream 10000 false scaffold02352: 261363-271362 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122237464 5265 Fabidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain