Protein Family : zinc knuckle (CCHC-type) family protein 122051084

Method ID:  5273 Method Name:  Angiosperm
Sequence Alignment:  View MSA Member Count:  1953

5330 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29777.t000007 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 300   29777: 83363-83662
29788.t000014 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 312   29788: 77234-77545
29823.t000004 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 913   29823: 87871-88783
29908.t000109 (1 of 1) PF14227 - gag-polypeptide of LTR copia-type (UBN2_2) R. communis v0.1 510   29908: 1374439-1374948
29908.t000262 conserved hypothetical protein R. communis v0.1 650   29908: 612161-612810
30065.t000012 conserved hypothetical protein R. communis v0.1 707   30065: 488181-488887
30115.t000010 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 418   30115: 85192-85609
30119.t000004 (1 of 3) PF14223 - gag-polypeptide of LTR copia-type (UBN2) R. communis v0.1 617   30119: 139560-140176
30152.t000037 conserved hypothetical protein R. communis v0.1 444   30152: 1343249-1343692
30190.t000224 conserved hypothetical protein R. communis v0.1 608   30190: 1147171-1147778
30190.t000316 (1 of 3) PF13961 - Domain of unknown function (DUF4219) (DUF4219) R. communis v0.1 306   30190: 1718175-1718480
30225.t000009 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 267   30225: 293138-293404
29506.t000006 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 387   29506: 37365-37751
29646.t000002 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 297   29646: 11744-12040
28331.t000007 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 378   28331: 20570-20947
28331.t000008 conserved hypothetical protein R. communis v0.1 432   28331: 21008-21439
28752.t000010 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 1003   28752: 75339-76341
29669.t000051 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 831   29669: 320471-321301
29693.t000017 (1 of 22) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) R. communis v0.1 273   29693: 161217-161489
28883.t000002 conserved hypothetical protein R. communis v0.1 339   28883: 33700-34038
Cucsa.392530 (1 of 23) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) C. sativus v1.0 555   scaffold04063: 169135-169689
Cucsa.398980 (1 of 14) PF14223 - gag-polypeptide of LTR copia-type (UBN2) C. sativus v1.0 509   scaffold04172: 1-509
Cucsa.396940 (1 of 3) PTHR11439//PTHR11439:SF172 - GAG-POL-RELATED RETROTRANSPOSON C. sativus v1.0 1022   scaffold04133: 69-1090
Cucsa.333400 (1 of 85) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON C. sativus v1.0 1528   scaffold03280: 374-1901
Cucsa.031340 (1 of 10) PTHR11439//PTHR11439:SF127 - GAG-POL-RELATED RETROTRANSPOSON C. sativus v1.0 2093   scaffold00429: 336427-338519
Cucsa.213770 (1 of 21) PTHR11439//PTHR11439:SF192 - GAG-POL-RELATED RETROTRANSPOSON C. sativus v1.0 1021   scaffold01543: 1689024-1690044
Cucsa.264050   C. sativus v1.0 213   scaffold02330: 183692-183904
Cucsa.265830 (1 of 2) PF00098//PF14227 - Zinc knuckle (zf-CCHC) // gag-polypeptide of LTR copia-type (UBN2_2) C. sativus v1.0 870   scaffold02352: 271363-272232
Cucsa.281600 (1 of 23) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) C. sativus v1.0 1179   scaffold02639: 309327-310505
Cucsa.306010 (1 of 1) PF00665//PF14227 - Integrase core domain (rve) // gag-polypeptide of LTR copia-type (UBN2_2) C. sativus v1.0 2479   scaffold02973: 8178-10656

1000 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29669.m000842 R. communis v0.1 122051084 zinc knuckle (CCHC-type) family protein 20 5273 Angiosperm
29693.m001979 R. communis v0.1 122051084 zinc knuckle (CCHC-type) family protein 20 5273 Angiosperm
29823.m000212 R. communis v0.1 122051084 zinc knuckle (CCHC-type) family protein 20 5273 Angiosperm
29908.m006058 R. communis v0.1 122051084 zinc knuckle (CCHC-type) family protein 20 5273 Angiosperm
30115.m001184 R. communis v0.1 122051084 zinc knuckle (CCHC-type) family protein 20 5273 Angiosperm
30119.m000594 R. communis v0.1 122051084 zinc knuckle (CCHC-type) family protein 20 5273 Angiosperm
30152.m002416 R. communis v0.1 122051084 zinc knuckle (CCHC-type) family protein 20 5273 Angiosperm
30190.m011080 R. communis v0.1 122051084 zinc knuckle (CCHC-type) family protein 20 5273 Angiosperm
Cucsa.265830.1 C. sativus v1.0 122051084 zinc knuckle (CCHC-type) family protein 12 5273 Angiosperm
Cucsa.281600.1 C. sativus v1.0 122051084 zinc knuckle (CCHC-type) family protein 12 5273 Angiosperm
Cucsa.306010.1 C. sativus v1.0 122051084 zinc knuckle (CCHC-type) family protein 12 5273 Angiosperm
Cucsa.398980.1 C. sativus v1.0 122051084 zinc knuckle (CCHC-type) family protein 12 5273 Angiosperm
orange1.1g035850m C. sinensis v1.1 122051084 zinc knuckle (CCHC-type) family protein 9 5273 Angiosperm
orange1.1g036141m C. sinensis v1.1 122051084 zinc knuckle (CCHC-type) family protein 9 5273 Angiosperm
orange1.1g028119m C. sinensis v1.1 122051084 zinc knuckle (CCHC-type) family protein 9 5273 Angiosperm
orange1.1g045690m C. sinensis v1.1 122051084 zinc knuckle (CCHC-type) family protein 9 5273 Angiosperm
ATMG00300.1 A. thaliana TAIR10 122051084 zinc knuckle (CCHC-type) family protein 9 5273 Angiosperm
AT1G34070.1 A. thaliana TAIR10 122051084 zinc knuckle (CCHC-type) family protein 9 5273 Angiosperm
Thhalv10017677m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10011941m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10009474m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10009460m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10028209m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10027425m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10003107m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10002805m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10002979m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10029519m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10029300m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm
Thhalv10029236m E. salsugineum v1.0 122051084 zinc knuckle (CCHC-type) family protein 54 5273 Angiosperm