Gene : Cucsa.374220 C. sativus v1.0
Defline:  (1 of 1) PTHR10742:SF294 - PROTOPORPHYRINOGEN OXIDASE 1, CHLOROPLASTIC Genomic Order:  13
Name:  ? Cucsa.374220 Secondary Identifier:  ? PAC:16981884
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csativus CHLOROPHYLL-SYN Cucumis sativus pathologic  
Csativus HEME-BIOSYNTHESIS-II Cucumis sativus pathologic  
Csativus PWY-5918 Cucumis sativus pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.374220 0.5kb upstream 0.5kb upstream 6033 true scaffold03733: 127535-133567 Cucumis sativus
Cucsa.374220 0.5kb upstream 0.5kb upstream 500 false scaffold03733: 133068-133567 Cucumis sativus
Cucsa.374220 0.5kb downstream 0.5kb downstream 6033 true scaffold03733: 127035-133067 Cucumis sativus
Cucsa.374220 0.5kb downstream 0.5kb downstream 500 false scaffold03733: 127035-127534 Cucumis sativus
Cucsa.374220 1.0kb upstream 1.0kb upstream 6533 true scaffold03733: 127535-134067 Cucumis sativus
Cucsa.374220 1.0kb upstream 1.0kb upstream 1000 false scaffold03733: 133068-134067 Cucumis sativus
Cucsa.374220 1.0kb downstream 1.0kb downstream 6533 true scaffold03733: 126535-133067 Cucumis sativus
Cucsa.374220 1.0kb downstream 1.0kb downstream 1000 false scaffold03733: 126535-127534 Cucumis sativus
Cucsa.374220 2.0kb upstream 2.0kb upstream 7533 true scaffold03733: 127535-135067 Cucumis sativus
Cucsa.374220 2.0kb upstream 2.0kb upstream 2000 false scaffold03733: 133068-135067 Cucumis sativus
Cucsa.374220 2.0kb downstream 2.0kb downstream 7533 true scaffold03733: 125535-133067 Cucumis sativus
Cucsa.374220 2.0kb downstream 2.0kb downstream 2000 false scaffold03733: 125535-127534 Cucumis sativus
Cucsa.374220 5.0kb upstream 5.0kb upstream 10533 true scaffold03733: 127535-138067 Cucumis sativus
Cucsa.374220 5.0kb upstream 5.0kb upstream 5000 false scaffold03733: 133068-138067 Cucumis sativus
Cucsa.374220 5.0kb downstream 5.0kb downstream 10533 true scaffold03733: 122535-133067 Cucumis sativus
Cucsa.374220 5.0kb downstream 5.0kb downstream 5000 false scaffold03733: 122535-127534 Cucumis sativus
Cucsa.374220 10.0kb upstream 10.0kb upstream 15533 true scaffold03733: 127535-143067 Cucumis sativus
Cucsa.374220 10.0kb upstream 10.0kb upstream 10000 false scaffold03733: 133068-143067 Cucumis sativus
Cucsa.374220 10.0kb downstream 10.0kb downstream 15533 true scaffold03733: 117535-133067 Cucumis sativus
Cucsa.374220 10.0kb downstream 10.0kb downstream 10000 false scaffold03733: 117535-127534 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305457 5265 Fabidae View MSA
124065931 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain